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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACAATGATTGGGAAAGGTGCATTTGGGGAGgtatgtatatgattactgtgatatgactgactatgctttcttcctccgacttatgaatatgttttaaacactggatggcagctggctccaaaatagttgg...

Basic information

species Glycine max
transcript GLYMA13G18670.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 2
AGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACAATGATTGGGAAAGGTGCATTTGGGGAGgtatg-tatatgattactgtga-tatgactgactatgctttcttcctccgacttatgaatatgttttaaacactggatggcagctggctccaaaatagttgg
 ||||| || || || || ||||||||  | |||||||| || ||| ||||||||||||||||  | ||||||||||| |||||||| |||||||| ||||||   || |  |||  ||  |  |||    | | | ||||  |  ||| ||||         || ||    ||| |       |  ||| |          
TGAGAAGAAAGAGACAGAGTATATGCGTATGCAGAGGCACAAAATGAGTGTTGATGATTTTGATCTTTTGACAATGATAGGGAAAGGAGCATTTGGTGAGgtaaactaaactattcatgcaaacatggaaaaatct-cttttgtgatcc-actt---------ttctagttgctgcaatattttttcctctag---------

upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 2
AGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACAATGATTGGGAAAGGTGCATTTGGGGAGgtatgtatatgattactgtgatatgactgactatgctttcttcctccgacttatgaatatgttttaaacactggatggcagctggctccaaaatagttgg-------
 ||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||| ||||| || |||||||| |||||||  || |      ||||| || |   |||   || | || |      |  | | | |   ||     |    |||   |  ||| || |||  |          
GGAGAAGAAGGAAACTGAATACATGCGCCTTCAAAGGCATAAGATGGGTGCTGATGATTTTGAATTATTGACGATGATCGGGAAGGGAGCATTTGGAGAGgtatacattta-----tgtgaaattat--actggtctctttttccaaatttcttaattcttaattcttttccatttggtttcaagcttcataatcatgcttctagct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315781|gb|FK008491.1|FK008491
EST:     GATTGGGAAAGGTGCATTTGGGGAG                         GTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAG
genomic: GATTGGGAAAGGTGCATTTGGGGAGgtatgtatat ... tttgttccagGTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAG
EST: gi|192315782|gb|FK008492.1|FK008492
EST:     GATTGGGAAAGGTGCATTTGGGGAG                         GTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAG
genomic: GATTGGGAAAGGTGCATTTGGGGAGgtatgtatat ... tttgttccagGTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAG
EST: gi|18039971|gb|BM308265.1|BM308265
EST:     TTGATGATTTTGAGTTATTGACAATGATTGGGAAAGGTGCATTTGGGGAG                         GTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAG
genomic: TTGATGATTTTGAGTTATTGACAATGATTGGGAAAGGTGCATTTGGGGAGgtatgtatat ... tttgttccagGTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAG