1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtggattaaattcatgttctctctcgttaatatgttctgaaaataaagtgtcggtcgttacttgattcggttacgctgggaaatagttgtttgt...
species | Glycine max |
transcript | GLYMA13G18170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|214004977|gb|DB989110.1|DB989110
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|9564054|gb|BE473563.1|BE473563
genomic: TGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: GCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|151406209|gb|EV276024.1|EV276024
genomic: GCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|151404411|gb|EV274221.1|EV274221
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGCCAAACGGTGTTGGAATTTGTGCTCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|7285126|gb|AW597613.1|AW597613
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|213598058|gb|DB972246.1|DB972246
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|254320598|gb|GR827047.1|GR827047
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|151398913|gb|EV268784.1|EV268784
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
EST: TGCCAAACGGTGTCGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG AGATAGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
genomic: TGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtgg ... tctgtttcagAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGgttagtgtggattaaattcatgttctctctcgttaatatgttctgaaaataaagtgtcggtcgttacttgattcggttacgctgggaaatagttgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa