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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGAGAAAGCTTTAACTCAGGCAACAAAGCTTCAAAGGAAGGATCTCTGTTTGGTTGGTGCAAGCAGGACCGATGCAGGAGTCCATGCTTGGGGTCAGgtccgacgttttttcattttatgtggcttcaactttcaagcaacaaccatcacatatttataacttactgtgactgcag

Basic information

species Glycine max
transcript GLYMA13G17960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17960.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G06950.1 (Arabidopsis thaliana), 5'ss of exon 3
CGTGGAGAAAGCTTTAACTCAGGCAACAAAGCTTCAAAGGAAGGATCTCTGTTTGGTTGGTGCAAGCAGGACCGATGCAGGAGTCCATGCTTGGGGTCAGgtccgac-gttttttcattttatgtggcttcaactttcaagcaacaaccatcacatatttataacttactgtgactgcag
  | || ||||| |||| ||||   ||| ||||    || || || ||     |  |||| ||  ||||||||||||||||||| || ||||||||||||||  |||     |  ||  |         |||||||   | ||  ||| |   |||   | ||   | | |         
GTTAGAAAAAGCCTTAATTCAGATTACAGAGCTCGGTAGAAAAGAGCTTCAGCTTATTGGAGCTGGCAGGACCGATGCAGGAGTTCACGCTTGGGGTCAGgtttgactaaagtcacaactctctctttctcaacttctcaacacaaactaaatcatccgt-tattcttcag---------

upper sequence: GLYMA13G17960.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g00860.t01 (Vitis vinifera), 5'ss of exon 3
CGTGGAGAAAGCTTTAACTCAGGCAACAAAGCTTCAAAGGAAGGATCTCTGTTTGGTTGGTGCAAGCAGGACCGATGCAGGAGTCCATGCTTGGGGTCAGgtccgacgttttttcattttatgtggcttcaac-----tttcaagcaacaaccatcacatatttataacttactgtgactgcag-------
 ||||| ||||| |||||    || ||||||||  ||||| |||| || |  ||||| |||||||| || || ||| ||||||||||||| |||||||||||| ||  ||| ||  | || || || || |       | ||   |||| ||||  ||| | |||  | ||||  | | |  ||       
TGTGGAAAAAGCATTAACCAGAGCGACAAAGCTAGAAAGGGAGGACCTGTACTTGGTAGGTGCAAGTAGAACAGATACAGGAGTCCATGCCTGGGGTCAGgtctgat-tttcttactcttgtgaggattgagaaaggatatcctccaacgaccaa-acaaacttaccagttacaatcagttaagctttcag