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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAGGTGCCTTCTCAAGAAGCCGTGGCACTTGGATTTCTCATGAACACAAAGGGCTTGGTAGAACTCATAGTTCTCAACATTGGGAAGGACCGTAAGgtattatataatatatcctatccactcatagtaacaaacactagttttctttggctcacacacacatatgtcttttaattgttgttataattaaaagacttttccttcattgttatatttgtttatgaatcgttcttcttgcaatacag

Basic information

species Glycine max
transcript GLYMA13G17670.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g01150.t01 (Vitis vinifera), 5'ss of exon 2
GTGCAAGGTGCCTTCTCAAGAAGCCGTGGCACTTGGATTTCTCATGAACACAAAGGGCTTGGTAGAACTCATAGTTCTCAACATTGGGAAGGACCGTAAGgtattatataatatatcctatccactcatagtaacaaacactagttttctttggctcacacacacatatgtcttttaattgttgttataattaaaagacttttccttcattgttatatttgtttatgaatcgttcttcttgcaatacag
 |  ||||||||       || || || | ||||||||| ||||||||||| ||||||||||| || || || || ||||||||||| |||||||| ||||||  |||   |   || |       ||||||     |   | | | |   | | |  |  || ||| |  |||     | |  |||||  || |                                                      
ATTTAAGGTGCCGATGAGGGAGGCTGTTGTACTTGGATTCCTCATGAACACCAAGGGCTTGGTGGAGCTGATCGTCCTCAACATTGGCAAGGACCGGAAGgtac-ataagctcactcattctggtacatagttgatgatttttggtctgggtaggtggctgac-catcttgcttccttgtttgattatatatatag-----------------------------------------------------