Sequence
atgc intronic sequence ATGC exonic sequenceATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGgtgaggatttttcatcctgcttccaatgtatgtgaagggatacaaaagtcgtcactcactcttcatgacagaggtctttacttagtatccaatgtcattg...
Basic information
species | Glycine max |
transcript | GLYMA13G17170.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G17170.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G42950.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGgtgag-------gatttttcatcctgcttccaatgtatgtgaagggatacaaaagtcgtcactcactcttcatgacagaggtctttacttagtatccaatgtcattg
| ||||| || ||||||||||| ||||| || ||||||| ||| ||||| ||||| ||||| |||||||| || |||||| ||||||||| | |||||| || | || | || |||||| | | | | | || || |||| | | ||| || | || | | |
CTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAGTTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGgttagttgattggtttgtgaattttgcttctggggactattcttgtgtttgcaa--tgtaactcttcttgtgtttgcattgtccttgttgagctttttaggc-----
upper sequence: GLYMA13G17170.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g00720.t01 (Vitis vinifera), 5'ss of exon 2
ATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGgtgaggatttttcatcctgcttccaatgtatgtgaagggatacaaaagtcgt-cactcactcttcatgacagaggtctttacttag---tatccaatgtcattg
|||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||| || || |||| |||| | ||| || | ||||| || || || | | ||| | | || ||| | ||| || | ||
ATGCCTCCCTTGCCTTCATATGGGTATGGGAGAGAGCATCGTGGAGCTCGATATGGGAGTTTGATTCATGGTCAAAATCTTAAGGATGTTGTTATAACAGgtcag-atatttcttccttttgccactgagt-tgaagtactattcctgttaaatggccaaagtgta-gacttggatgttgactaaaaaatattcacatttgtt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7589017|gb|AW704800.1|AW704800EST: ATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAG GGCATAACGGTACCATAAATGGACAGGGACAAACATGGTGGAAAAAATATC
genomic: ATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGgtgaggattt ... taactgacagGGCATAACGGTACCATAAATGGACAGGGACAAACATGGTGGAAAAAATATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGgtgaggatttttcatcctgcttccaatgtatgtgaagggatacaaaagtcgtcactcactcttcatgacagaggtctttacttagtatccaatgtcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG