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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATCATTTGCTTTCAGAAGGCTTCCTCTATGGATATTGAGGAAAATGTCCGGTATCCAGACGTGCCCTCATATTTAGAATATGTGCACAATCGCCAGgtacttttattgtttgggtttactgaatgcaaatctgtttggtttttggtgatgtggatgtgaaacatcccagattcagtcatttttaggtagattatct...

Basic information

species Glycine max
transcript GLYMA13G16040.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 21
AGATATCATTTGCTTTCAGAAGGCTTCCTCTATGGATATTGAGGAAAATGTCCGGTATCCAGACGTGCCCTCATATTTAGAATATGTGCACAATCGCCAGgtacttttattgtttgggtttactgaatgcaaatctgtttgg--tttttggtgatgtggatgtgaaacatcccagattcagtcatttttaggtagattatct
 ||||||||||||||||| ||  |  |  | || || | ||  |||    |||| |||||||| || || |||| ||||||||| |||||||||||||| ||||| || |     |  | |  |  |||  ||  ||  |    || ||  |  | || |  |   | ||      |    | |   ||      |  ||  
TGATATCATTTGCTTTCAAAAAACACCTCCAATTGAAAGTGGTGAATCATTCCGCTATCCAGATGTTCCTTCATTTTTAGAATACGTGCACAATCGCCAAgtactgttctatggagcttctgttatatgttaacatgaataaatttcttaatagt-tgaagctagtatattgtttgtgtttttaggattgacactagcatg-