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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaaatcatccccccttctaaatttgagttttgcatatattttgattaaacatgattaaaatgaaagggttagtgtatgaatgattttgatgggga...

Basic information

species Glycine max
transcript GLYMA13G15140.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaaatcatccccccttctaaatttgagttttgcatatattttgattaaacatgattaa-aatgaaagggttagtgtatgaatgattttgatgggga
|| |  |||| |||||||||||||||||||||||||| |||||| | || ||||| ||||  |  |||||||||||||||||||||||||| ||||| |||||||||| | |  |  | ||||    |    |||   |  | | ||  | |   || |||   ||| || |   ||                        
GGGAAAGTGGTGAGATTGGGTTTGATGTTTACTTCTCCATGGCACGGGGAAATGCTTCTGCTCATGCTATGGAAATGACCAAGTGGTTTGATACCAACTAgtaagtaactgaatcttctttcttccctc---tttgttaagtttctttctcagttattattgctaataaatgctctaacag--------------------

upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 2
GGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaa--atcatccccccttctaaatt--tgagttttgcatatattttgattaaacatg--attaaaatga--aagggttagtgtatgaatga---ttttgatgggga
||||||||||||| |||||||||||||  ||||| || ||||| || || ||||| |||||| |||| |||||||||||||||||||| |||||||| |||| ||| |  | |   | | ||||| |  |  |||||  |  | ||  |||  | |  | |   | |    |    |||   |    ||||||||    |||||||   | 
GGAATGGTGGGGAAATTGGGTTTGATGCCTACTTTTCCATGGCTAGGGGCAATGCCTCTGTAACAGCCATGGAAATGACCAAGTGGTTCGACACCAACTAgtgagtgatgacctctctctcttctcatgtcctgagtgatttagatgatttagtaatcctttttactggtgtagttaagccatgacttatgaatgtgatttttgatacag-

upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S55_44V6.1 (Physcomitrella patens), 5'ss of exon 1
GGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaaatcatccc--cccttctaaatttgagttttg--catat-attttgattaaacatgattaaaa------tgaaagggttagtgtatgaatgattttgatgggga-
                                      |||||  | || ||     |    || |  || ||||||||||||||||| |||||||||||||| ||      |||   ||  | |   ||   | ||||  || || ||| ||| |      | || | |      ||  | || || |       ||| ||   || | | 
--------------------------------------ATGGCTCGTGGAAACAAGACAAAGCCTGTCATTGAAATGACCAAGTGGTTCGACACCAATTAgtacgtgctggctccggacctatttggtttattgctttgttcagatgattgtgagtgggtgagtttgagagtgagctgggaaggctaatcgtcagttgagttatgtgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692865|gb|BM521713.1|BM521713
EST:     AATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTA                         CCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATC
genomic: AATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaaat ... tatggtacagCCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATC
EST: gi|207759217|gb|GD731728.1|GD731728
EST:     AATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTA                         CCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATC
genomic: AATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaaat ... tatggtacagCCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATC