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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTCCACGGTACAGAGATTCAGTTAGAACAATAACTCCAGGGTTGCCCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtgtgtattttcttttcttttcttttttttttagtttgttgcatcactttaatttgatgaaaatgcttccgtttttggagatcaagttatggattaggccatcacttttagatttagcagctatggtctaattaagagtaacaataattataataattaatgtttggtggggtttgttcag

Basic information

species Glycine max
transcript GLYMA13G10640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10640.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g36950.3 (Oryza sativa), 5'ss of exon 2
TCTGCCTCCACGGTACAGAGATTCAGTTAGAACAATAACTCCAGGGTTGCCCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtat--gttgtgtgtattttcttttcttttcttttttttttagtttgttgcatcactttaatttgatgaaaatgcttccgtttttggagatcaagttatggattaggccatcacttttagatttagcagctatggtctaattaagagtaacaataattataataattaatgtttggtggggtttgttcag
 || ||  |  | ||||| |||||||| ||  | || |  |||||| ||||||| || || |||||||||||||| ||||| ||||| || ||||| ||||||    || || || |     | ||| |       | |||  ||   |  |  |   |       |    |   |    |||    |  |  |  | ||                                                                                          
GCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattttgggtgtagctatatctatgacgccatattt--ttcactaaaaaatagtcgacatgtatttacattctaatttcctaaagtacatatgtgat----------------------------------------------------------------------------------------

upper sequence: GLYMA13G10640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T02 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGGTACAGAGATTCAGTTAGAACAATAACTCCAGGGTTGCCCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtgtgtattttcttttcttttcttttttttttagtttgttg-catcactttaatttgatgaaaatgcttccgtttttggagatcaagttatggattag-gccatcacttttagatttagcagctatggtctaattaagagtaacaataattataataattaatgtttggtggggtttgttcag
    | |||| ||||||| ||||| || ||  | || |  || ||  ||||||| || || |||||||||||||| ||||| ||||| || |||||||||||  | |        |  ||  |||  |||  | ||||  |||| |   |||||   | |||    ||  |  | |  |  | ||   ||    | ||   | ||   | | |  |||  ||   ||   |     |||| ||  |  ||  |       |||   | ||  |   ||||       |||
----CGTCCA-GGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGGTGAGgtccaaactatacctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatg---attccatcatt--tcagcatctttatctttcaatcatgcttgtggttactaaatataaaaaaagaagggggaaatttctcatcgtctatgggacgaacgcag

upper sequence: GLYMA13G10640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGGTACAGAGATTCAGTTAGAACAATAACTCCAGGGTTGCCCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtgtgtattttcttttcttttcttttttttttagtttgttg-catcactttaatttgatgaaaatgcttccgtttttggagatcaagttatggattag-gccatcacttttagatttagcagctatggtctaattaagagtaacaataattataataattaatgtttggtggggtttgttcag
 |||||  |  ||||||| ||||| || ||  | || |  || ||  ||||||| || || |||||||||||||| ||||| ||||| || |||||||||||  | |        |  ||  |||  |||  | ||||  |||| |   |||||   | |||    ||  |  | |  |  | ||   ||    | ||   | ||   | | |  |||  ||   ||   |     |||| ||  |  ||  |       |||   | ||  |   ||||       |||
GCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGgtgaggtccaaactatacctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatg---attccatcatt--tcagcatctttatctttcaatcatgcttgtggttactaaatataaaaaaagaagggggaaatttctcatcgtctatgggacgaacgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098890|gb|HO760731.1|HO760731
EST:     ACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: ACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|254331893|gb|GR846203.1|GR846203
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|151402959|gb|EV272772.1|EV272772
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|11273755|gb|BF324150.1|BF324150
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTNTGGAAGATCTAATATTGATCCAACGGCTTGGGAGGATTAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|58024390|gb|CX711131.1|CX711131
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|5057954|gb|AI736430.1|AI736430
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATNAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|151395760|gb|EV265637.1|EV265637
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|4396241|gb|AI495238.1|AI495238
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|15000771|gb|BI321585.1|BI321585
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|14990506|gb|BI316179.1|BI316179
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|11274747|gb|BF325082.1|BF325082
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|21600694|gb|BQ611025.1|BQ611025
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGTAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|213594925|gb|DB977239.1|DB977239
EST:     TACTCCACTCACCAACTCCATCGTGAT-TTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAA
genomic: TACTCCACTCACCAACTCCATGGT-ATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAA
EST: gi|9204543|gb|BE330767.1|BE330767
EST:     CCTTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|120494939|gb|EH223106.1|EH223106
EST:     CTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|4313652|gb|AI460771.1|AI460771
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|254331894|gb|GR846204.1|GR846204
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|11413917|gb|BF425928.1|BF425928
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|9204544|gb|BE330768.1|BE330768
EST:     TGTACAACTACTCCACTCACCAACGCCATGGTATCTTTCAG                         GCAGCAAGTCTTGTAGGATCTAATATTGATCC-ACTGGCTCGGAAGGATAA
genomic: TGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAAC-GGCTTGGGAGGATAA
EST: gi|10843221|gb|BF066529.1|BF066529
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|4301736|gb|AI443233.1|AI443233
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|58017712|gb|CX704454.1|CX704454
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|7588504|gb|AW704360.1|AW704360
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|214006357|gb|DB985747.1|DB985747
EST:     CTACTCCACTCACCAACTCCATGGGGTAATTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
EST: gi|58018450|gb|CX705192.1|CX705192
EST:     CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG
genomic: CCCTTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgttgtg ... gtttgttcagGCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAG