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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAAGGGTGTCAATATTATGGCTTTCTGTAAGGATTACAACGCTAGAACCGCCGACAAGCCCGGTTATGTCATTCCTGTGGAAATTACAGTCTACGACgtcagttcttagctctgctctgctctttttatcttcttctttttttccctttcctgaatcgcaatttgcatcatatgttttacttaccttacccttgtag

Basic information

species Glycine max
transcript GLYMA13G10300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10300.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
TTCCAAGGGTGTCAATATTATGGCTTTCTGTAAGGATTACAACGCTAGAACCGCCGACAAGCCCGGTTATGTCATTCCTGTGGAAATTACAGTCTACGACgtcagttcttagctctgctctgctctttttatcttcttctttttttccctttcctgaatcgcaatttgcatcatatgttttacttaccttacccttgtag
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| | || ||||| |||||||| |||||||| |||||||| ||  |||  | |||           || || |||||        |    ||   | ||| | |       |   | ||||         |   || | ||
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgct-----------ttcttgtcttccgtccccgtaaatttggataaattg-agcagcttttgaaggtttcgtggtttgtttgctcgcag

upper sequence: GLYMA13G10300.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S46_69V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCCAAGGGTGTCAATATTATGGCTTTCTGTAAGGATTACAACGCTAGAACCGCCGACAAGCCCGGTTATGTCATTCCTGTGGAAATTACAGTCTACGACgtcagttcttagctctgctctgctctttttatcttcttctttttttccctttcctgaatcgcaatttgcatcatatgttttacttac-cttacccttgtag
||||||||||||||| |||||||||||||| ||||| || || || |  || || |||||||| || ||| |||| || || || || ||||| ||||| ||  ||  ||  |   |   |    |  ||  ||  | ||  ||||     |  |  ||   |   || ||   |  |  | || |  |  |      |  
TTCCAAGGGTGTCAACATTATGGCTTTCTGCAAGGAATATAATGCCAAGACTGCTGACAAGCCTGGCTATATCATCCCCGTCGAGATCACAGTTTACGATgtatgtggttc-cagcgtcttttcttcgttccctagtgctcatttttgtagtgatttatgttagactgaattgaaaatgctgctcatacgcattgcaatga