Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgcaatttgttaattataatttcttgaaagtcaaatcccttttattctatgttgtttgcttctgttatatattttcagaattacatattagtta...

Basic information

species Glycine max
transcript GLYMA13G09260.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691494|gb|BG157830.1|BG157830
EST:     ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
EST: gi|163928959|gb|EH038663.1|EH038663
EST:     ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
EST: gi|298187162|gb|HO034311.1|HO034311
EST:     ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACTA
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACTA
EST: gi|151394671|gb|EV264542.1|EV264542
EST:     ATATGTTACAATGGGAGGGAAAAAGTCGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
EST: gi|254322261|gb|GR837675.1|GR837675
EST:     ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
EST: gi|207783131|gb|GD757152.1|GD757152
EST:     ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTC
EST: gi|298179524|gb|HO027995.1|HO027995
EST:     ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG                         CCGGACAGGAAAGGTTTAGAACACTTACT
genomic: ATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGgtaatgtgca ... ctttgtgcagCCGGACAGGAAAGGTTTAGAACACTTACT