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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgaccttttcttctctttagacaaatgggtggtcgctttgtttttttttttttgttaatttttttgtttgttttgtgaattatgctatgcag

Basic information

species Glycine max
transcript GLYMA13G04940.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189073|gb|HO037476.1|HO037476
EST:     TCAGCGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|192303526|gb|FG995932.1|FG995932
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|298195533|gb|HO043924.1|HO043924
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAGTGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|298175821|gb|HO018418.1|HO018418
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|192298241|gb|FG991717.1|FG991717
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|151411869|gb|EV281680.1|EV281680
EST:     TCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|213603274|gb|DB970395.1|DB970395
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|120491083|gb|EH219250.1|EH219250
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|192298016|gb|FG993250.1|FG993250
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|151394021|gb|EV263892.1|EV263892
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAGGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|254330721|gb|GR841986.1|GR841986
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|23062388|gb|BU578509.1|BU578509
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|151407677|gb|EV277492.1|EV277492
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|151395404|gb|EV265281.1|EV265281
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|120530553|gb|EH258686.1|EH258686
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
EST: gi|213611820|gb|DB958886.1|DB958886
EST:     TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAG                         GGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT
genomic: TCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgacctt ... tgctatgcagGGCTTTTCTCTACAAGGGCTTTTTATCCGATGAAGAATGTGATCATTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGgtttgaccttttcttctctttagacaaatgggtggtcgctttgtttttttttttttgttaatttttttgtttgttttgtgaattatgctatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG