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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGACCGCTGGAGAAGAATCTTTCCTATGTCATTTGTGTTCTGTATTAACATTGTGCTAGGGAATgtgagcctaagatacataccggtttcttttatgcagacaataaaatcattcacccctgcaacaacag

Basic information

species Glycine max
transcript GLYMA13G03210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g01410.1 (Oryza sativa), 5'ss of exon 2
GCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGACCGCTGGAGAAGAATCTTTCCTATGTCATTTGTGTTCTGTATTAACATTGTGCTAGGGAATgtgagcctaagatacataccggtttcttttatgcagacaataaaatcattcacccctgcaacaacag--------------------------------------------------------------------------------------------------------------------------------------
                                                                   ||||||||||| || |||||||| || || ||||| ||||| ||||| || || || || || |||||||| |||||||| |||||||||||||| ||||                                                                                                                                      
-------------------------------------------------------------------TTTGTGTTCTGCATAAACATTGTACTGGGAAATGTCAGCCTGAGATATATTCCAGTCTCCTTCATGCAGACCATAAAATCTTTCACCCCTGCAACGACAGgttctctgattcctggcctttctaagctctttttttttttgagctctttattgtcaattcagtcgttctcagttattccgcttttctgcaattaatgtaagcatattctgatggattcttccattgtaacacag

upper sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 3
GCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGACCGCTGGAGAAGAATCTTTCCTATGTCATTTGTGTTCTGTATTAACATTGTGCTAGGGAATgtgagcctaagatacataccggtttcttttatgcagacaataaaatcattcacccctgcaacaacag-------------------------------------------------------------------------------------------------------------------------------
                                                                   ||||| ||||| || ||||| ||||| || ||||| |||||  | ||||| || || || ||||||||||| || ||||| |||||||||||||| || |                                                                                                                               
-------------------------------------------------------------------TTTGTCTTCTGCATAAACATCGTGCTCGGAAATGTCAGCCTGCGCTACATCCCAGTCTCCTTTATGCAGACTATCAAATCTTTCACCCCTGCAACCACGGgtagagtcattttgcacctccttacatcatcactattccatattcattttcgttttcttagcattatcatattgctacagcatgtaacaccctccctgatggtctgcttccaatccatgtcatgcag

upper sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGACCGCTGGAGAAGAATCTTTCCTATGTCATTTGTGTTCTGTATTAACATTGTGCTAGGGAATgtgagcctaagatacataccggtttcttttatgcagacaataaaatcattcacccctgcaacaacag-----------------------------------------------------------------------------------------------
                                                                   |||||||||||||| ||||||||| | |||||| | || || |||||||| || || |||||||||||||| || ||||| || || |||||||||||||                                                                                               
-------------------------------------------------------------------TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgatttttttttattgttctgattggtttttgtgtaatggttttttgagtgcag

upper sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 2
GCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGACCGCTGGAGAAGAATCTTTCCTATGTCATTTGTGTTCTGTATTAACATTGTGCTAGGGAATgtgagcctaagatacataccggtttcttttatgcagacaataaaatcattcacccctgcaacaacag--------------------------------------------------------------------------------------------------------------
                                                                   ||||| |||||||||||||| ||| | ||||| |||||  |  | ||||| || ||||||||||||||||| ||||| |||||||| |||||||||||||                                                                                                              
-------------------------------------------------------------------TTTGTATTCTGTATTAACATAGTGTTGGGGAACGTGAGTTTGCGTTACATTCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacag