1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAATGAATAAACCAACAAGCGACGCAATTAATATGGGGAAAAGGAGCCTGGAGGGTGGAGAAGATGATCAGCCCGAACGAAAGAGGCCTGCTCTTGCCAGgtaaattaattcctcatcgtttttcaattgtgtgcttccttgaatttccattctaaatccaccttttaagtttgggggtgagagtgggattttaattttg...
species | Glycine max |
transcript | GLYMA13G01160.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGGGTGGAGAAGATGATCAGCCCGAACGAAAGAGGCCTGCTCTTGCCAG TGTAATTGTGGAAGCTCTCAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCEST: gi|208024507|gb|GD825509.1|GD825509
genomic: GAGGGTGGAGAAGATGATCAGCCCGAACGAAAGAGGCCTGCTCTTGCCAGgtaaattaat ... tattttgcagTGTAATTGTGGAAGCTCTCAAGGTGGACAGTTTGCAGAAGCTTTGCTCATC
EST: CCCGAACGAAAGAGGCCTGCTCTTGCCAG TGTAATTGTGGAAGCTCTCAA
genomic: CCCGAACGAAAGAGGCCTGCTCTTGCCAGgtaaattaat ... tattttgcagTGTAATTGTGGAAGCTCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGAATAAACCAACAAGCGACGCAATTAATATGGGGAAAAGGAGCCTGGAGGGTGGAGAAGATGATCAGCCCGAACGAAAGAGGCCTGCTCTTGCCAGgtaaattaattcctcatcgtttttcaattgtgtgcttccttgaatttccattctaaatccaccttttaagtttgggggtgagagtgggattttaattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtg