Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTGCCGCCGAACCAACCACCGAACCTCAGAAACCCTCTCCAAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttattaatcatcgccaccaccaccaccaccatcttttatcattataatatatatatatatatatatatatatatatatatatatatatatttatttatctggtcttgtttcttattttcag

Basic information

species Glycine max
transcript GLYMA13G00950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00950.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G086573_T01 (Zea mays), 5'ss of exon 2
CCTTTGCCGCCGAACCAACCACCGAACCTCAGAAACCCTCTCCAAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttattaatcatcgccaccaccaccaccaccatcttttatcattataatatatatatatatatatatatatat-atatatatatatatatatttatttatctggtcttgtttcttattttcag
   | |||       |  |  | |   ||| |   ||    |  | |||  |||||||| |||| || || ||||| |||||||||||||||||||| |||||   ||  |   |  ||   | |    | |   ||||  |       | |  |||||||  |  || | | |  | |  | |   | |   | |||  |||||                      
AGCTGGCCTTGCCTGCGGCGGCGGCTGCTCCGGCGCCGGAGCAGAGGAAGGCCGTCGACTCCTTTGGGCAGCGCACGTCCATCTACCGCGGCGTCACACGgtaagcta--agcta--gctgtcgcag--atccatatctaatccggccgtgaggtatatatgaacctaaaaaaaagtgacctttgcgtttgggtgttt-cttatcat--------------------

upper sequence: GLYMA13G00950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 2
CCTTTGCCGCCGAACCAACCACCGA-ACCTCAGAAACCCTCTCCAAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttattaatcatcgccaccaccaccaccaccatcttttatcattataatatatatatatatatatatatatatatatatatatatatatatttatttatctggtcttgtttcttattttcag
     | | | ||| || |   ||    | | | | || || || |||||  |||||||||||||||||||||| |||||||| ||| | || || || ||||    | | ||  ||    | | ||  | |    | | |     |  ||  | |||   ||| | | |     | |  | |||   ||| ||| | | ||||||        ||  |||||||||
-GCGAGGCTCAGAAGCAGCTGGCGCTGACGCCGGAGCCGTCGCCGAAGAAGTCCGTCGACACCTTCGGCCAACGGACCTCCATTTACAGAGGAGTTACACGgtg--atgtgaaaaatgatgatctccttccctgaaaacctcggggaaaattttttattattatttttct-----tctgaaaataataata-ataataaattatctca----aatttatattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795291|gb|AW780688.1|AW780688
EST:     CGCACCTCCATCTACCGCGGCGTCACCCG                         ACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
genomic: CGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
EST: gi|37995737|gb|CF807326.1|CF807326
EST:     ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCG                         ACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
genomic: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
EST: gi|21637582|gb|BM107737.1|BM107737
EST:     ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCG                         ACATAGATGGACGGGAAAGATACGAAGGTCATCTATGGGACAATAGTTTGT
genomic: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAA-GATACGAAGCTCATCTATGGGACAATAGTT-GT
EST: gi|6481417|gb|AW200688.1|AW200688
EST:     ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCG                         ACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
genomic: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG