1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTTAATTTCATTGATGTCTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccacttacatttctcactttaactgtaactaaattcatgttgtattattggctagacgacccttgccattgcacaatgccaattcccactcattc...
species | Glycine max |
transcript | GLYMA12G36990.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|298177857|gb|HO027410.1|HO027410
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCTCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|151395021|gb|EV264892.1|EV264892
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|4313864|gb|AI460983.1|AI460983
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: TACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTTCCTTCACTTCCAG -TATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTEST: gi|213590530|gb|DB973303.1|DB973303
genomic: TACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACT-CCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGT
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|298195816|gb|HO044207.1|HO044207
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|254331742|gb|GR843592.1|GR843592
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|298191369|gb|HO038848.1|HO038848
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|192306490|gb|FG996194.1|FG996194
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTAEST: gi|298175464|gb|HO015097.1|HO015097
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
EST: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAG GTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
genomic: CTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccact ... tggctggcagGTATGGAAGCTGTTGGGGTTGTGACAGCTGTGGGTGCTGGACTCACTGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTTAATTTCATTGATGTCTACTTTCGCAAAGGAGTTTACAAAGCCCCTTCTTTTCCCTTCACTCCAGgttccccacttacatttctcactttaactgtaactaaattcatgttgtattattggctagacgacccttgccattgcacaatgccaattcccactcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccactc