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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagtattgtattggtaaaaggttttaatttttcttgtctgttctggaaatggatgaatatgaattatggcggagttgaatgatctcctgtgctc...

Basic information

species Glycine max
transcript GLYMA12G35920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G53320.1 (Arabidopsis thaliana), 5'ss of exon 2
CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagt---attgtattggtaaaaggttt---taatttttcttgtctgttctggaaatggatgaatatgaattatggcg-gagttgaatgatctcctgtgctc
||||| ||  | ||| || |  | || ||  | |||||| ||||| ||||||| ||||||||||| || |||||||| || ||||||||||||| | |   |  |||||  |      |||   | ||| || ||||   ||| |  ||     ||| |  |  ||||||  ||  |||| | | |         
CCAGGTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTTACTTGTATCTTGCTCTAACACCATgtaagttatttcaaaagtattacttttccttttgcttcattcttattgttgattcagtcaaaattagaaaagtatatatggcttgaaatgaaagttttag-------

upper sequence: GLYMA12G35920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0014g01250.t01 (Vitis vinifera), 5'ss of exon 2
CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagtattgtattggtaaaaggttttaatttttcttgtctgttctggaaatggatgaatatgaattatggcggagttgaatgatctcctgtgctc-----------
|| ||||||||  ||  |   || |||||||||||||| |||||| ||||||  |||||||||||  | || ||||| ||||   | ||||||||| | || | ||||          |  |||||         |   |||     | ||       | ||   |  |    ||   || | | |             
CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTgtaagtaaatgtt-tgttgg---------gtgctttttgcaacacaatgaagaa-catttaaaccgcttctttgattggatcttttgggttcttcttccacagaaaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898823|gb|BE607791.1|BE607791
EST:     GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCAT                         CATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTG
genomic: GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagt ... ccattgccagCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTG
EST: gi|15285195|gb|BI469086.1|BI469086
EST:     GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCAT                         CATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTG
genomic: GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagt ... ccattgccagCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTG
EST: gi|26057434|gb|CA800348.1|CA800348
EST:     GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCAT                         CATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTG
genomic: GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagt ... ccattgccagCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTG
EST: gi|27445829|gb|CA952952.1|CA952952
EST:     GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCAT                         CATTCACAGATAAAG
genomic: GCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATgtaagtaagt ... ccattgccagCATTCACAGATAAAG