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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAAgtgcggcgtgttctaacctatctttacttccaatttttataaaaaaaatcattttgtactatatataaatatttacttcctttttgggactaacaggaat...

Basic information

species Glycine max
transcript GLYMA12G33950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAAgtgcggc---gtgttctaacctatctttacttccaatttttataaaaaaaatcattt---tgtactat-atataaatatttacttcctttttgggactaacaggaat
|||||||| ||| ||||   ||| || ||||||||  | || ||||||||||| || || ||||||| |||||||||||| ||||||||||| ||  |     ||  | ||    ||||||  |    ||||  || | |   ||   |       ||||  || || |   |||| |    ||||| | |||       
GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAGgttggattctgttgtttattaaatctttg-taatgatttaaatcatagttattgctcgagcacactaccatgtataaggttacctaaggtttgg-attaatc-----

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 2
GAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAAgtgcggcgtgt-tctaacctatcttt--acttccaatt----tttataaaaaaaatcattttgtactatatataaatatttacttcctttttgggactaacaggaat
|||||||||||| ||||    || || |||||| || |||||||||| ||||| || ||||| |||| |||||||||||| || |||||||| ||| |   ||  |||  |||||   |  | | | | ||     || | | |  | |  |||| | |  | ||||| |||  | || | ||   ||  | |       
GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATAATTTCCACCACCATTGGAGGCAAAAATGGAGAGCCTAAACAGgtgagagttggatctttcctattcctcgaatgcgagttattccttttgacattactgttttttttccttctataa-tatgcaattgcattcaagggtttaa------