Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggatttgtgtctcattctctgctgcagcttttgttttggtgtgatattttttattttattttgtgcaagtggattaagggatgttgaaatgttccgcttgcag

Basic information

species Glycine max
transcript GLYMA12G33800.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208072399|gb|GD869743.1|GD869743
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|208190100|gb|GD991812.1|GD991812
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGACCGAAATTTAAAGGACAAGGCAAT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTG-CCGAA-TTTAA-GG-CA-GGCAAT
EST: gi|208152170|gb|GD944403.1|GD944403
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193637371|gb|FK579424.1|FK579424
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTGCTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|209729591|gb|BW651892.1|BW651892
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|209711177|gb|BW676450.1|BW676450
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|254326694|gb|GR832846.1|GR832846
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|192332263|gb|FK023912.1|FK023912
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|208164752|gb|GD959030.1|GD959030
EST:     CTTATCCCTTCGGCTGCAGCCGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|192296880|gb|FG990241.1|FG990241
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAGGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|208304110|gb|GE106515.1|GE106515
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193470970|gb|FK438955.1|FK438955
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTAC-ATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|18690835|gb|BM519683.1|BM519683
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|209725723|gb|BW659852.1|BW659852
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|16348906|gb|BI974501.1|BI974501
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193698428|gb|FK641571.1|FK641571
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|208168057|gb|GD966437.1|GD966437
EST:     TTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGTAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGA
genomic: TTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAG-ATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGA
EST: gi|58018472|gb|CX705214.1|CX705214
EST:     -TATTCCCTTCGGCTGCAGCTGGTGATTCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: TTA-TCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193437707|gb|FK399598.1|FK399598
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|163922893|gb|EH039539.1|EH039539
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|207753684|gb|GD723282.1|GD723282
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|298180119|gb|HO025334.1|HO025334
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|208051726|gb|GD854775.1|GD854775
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|10231294|gb|BE800182.1|BE800182
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|8283256|gb|BE020817.1|BE020817
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGT
EST: gi|208151774|gb|GD947815.1|GD947815
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATG
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATG
EST: gi|207826019|gb|GD797786.1|GD797786
EST:     TGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: TGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|192321936|gb|FK012488.1|FK012488
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|192331039|gb|FK020259.1|FK020259
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|10848101|gb|BF070654.1|BF070654
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|15813734|gb|BI786009.1|BI786009
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193313601|gb|FK280452.1|FK280452
EST:     TGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: TGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|22521737|gb|BU080548.1|BU080548
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|192294937|gb|FG986656.1|FG986656
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|151399284|gb|EV269155.1|EV269155
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|21600800|gb|BQ611131.1|BQ611131
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|254345747|gb|GR859394.1|GR859394
EST:     TGTGTTTTACTAT-AGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: TGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193432368|gb|FK394754.1|FK394754
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193429472|gb|FK398102.1|FK398102
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCTAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193381019|gb|FK348850.1|FK348850
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCT
EST: gi|7234848|gb|AW570181.1|AW570181
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|151404414|gb|EV274224.1|EV274224
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|254345746|gb|GR859393.1|GR859393
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|209703892|gb|BW670747.1|BW670747
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTTTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|208328601|gb|GE126245.1|GE126245
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|207762970|gb|GD734783.1|GD734783
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|41145511|gb|CK605722.1|CK605722
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193364267|gb|FK332229.1|FK332229
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTG-TTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCTAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193585117|gb|FK543808.1|FK543808
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|15338139|gb|BI498795.1|BI498795
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATT-AAGG
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGG
EST: gi|208199480|gb|GD998181.1|GD998181
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|209720644|gb|BW677513.1|BW677513
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|10235331|gb|BE804219.1|BE804219
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193310732|gb|FK277540.1|FK277540
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193377766|gb|FK339680.1|FK339680
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTT
EST: gi|207802157|gb|GD774311.1|GD774311
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193697261|gb|FK641049.1|FK641049
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|207691612|gb|GD675273.1|GD675273
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|192322095|gb|FK012199.1|FK012199
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|5677885|gb|AI939015.1|AI939015
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
EST: gi|193352357|gb|FK314331.1|FK314331
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ccgcttgcagGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggatttgtgtctcattctctgctgcagcttttgttttggtgtgatattttttattttattttgtgcaagtggattaagggatgttgaaatgttccgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG