Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgatttccatgtttctagggtttagttacttagcaaattatatcctaaaaaaagctgtgatatgtattttgttttgatgtttttctgtgttcttatgtgaaatgcgaaactattgttgatttttttttttttgcttgtgttatcag

Basic information

species Glycine max
transcript GLYMA12G32850.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ16239 (Selaginella moellendorffii), 5'ss of exon 1
-----------CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACC---CAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgatttccatgtttctagggtttagttacttagcaaattatatcctaaaaaaagctgtgatatgtattttgttttgatgtttttctgtgttcttatgtgaaatgcgaaactattgttgatttttttttttttgcttgtgttatcag
           |   | |    || ||||||| |||     | ||| ||     |  ||||||||||||||| ||   |||||||| ||||||||||||||||     |     |  || |  | |   |||  |  |  ||| |  |   |                                                                                                  
GTTTTCCATGGCGGCGACAACTGAGGCTGTGGCTGTGGAGAAGCCCGCCGCCTCGTCCGATGTCAAGCTCTTCAATGCCTGGAGCTACGAGGATATTGAGgtaagcgct-----ggatccatcgatccattagct--ctgattttggctctag-------------------------------------------------------------------------------------------------

upper sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 1
-----------CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACC---CAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgatttccatgtttctagggtttagttacttagcaaattatatcctaaaaaaagctgtgatatgtattttgttttgatgtttttctgtgttcttatgtgaaatgcgaaactattgttgatttttttttttttgcttgtgttatcag
           |   | ||   || ||||||| |||     | ||| ||        ||||||||||||||| ||  ||||||||| ||||||||||||||||  |   || ||   ||   | | || |  ||  |  | ||     |||                                                                                                   
GTTTTCCATGGCGGCGACCACTGAGGCTGTGGCTGTGGAGAAGCCCGCCGCCTCCTCCGATGTCAAGCTCTTCAATTGCTGGAGCTACGAGGATATTGAGgtaa-gcgctcgatccatc---gatctattagct--gtgattttggctctag--------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163082|gb|HO011815.1|HO011815
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|19053070|gb|BM731737.1|BM731737
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298197636|gb|HO045115.1|HO045115
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|19934619|gb|BQ079649.1|BQ079649
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298178410|gb|HO024145.1|HO024145
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298166705|gb|HO010144.1|HO010144
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|209699234|gb|BW670194.1|BW670194
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298172772|gb|HO020326.1|HO020326
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298169887|gb|HO018511.1|HO018511
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298199446|gb|HO042809.1|HO042809
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|254347062|gb|GR856732.1|GR856732
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|57574861|gb|CX547836.1|CX547836
EST:     CCAGATCGATGTC-AGCTCTTTAACCGCTGGAGCTTCGAGGATA-TGANG                         GTTACTGACATTTCACTGGCTGATTACATTGGAG-TGCGGGCATCCAAGC
genomic: CCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGA-Ggtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGC-GGCATCCAAGC
EST: gi|193321667|gb|FK284095.1|FK284095
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298191427|gb|HO038906.1|HO038906
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGTTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|151400398|gb|EV270212.1|EV270212
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|20207721|gb|BQ133810.1|BQ133810
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298164708|gb|HO014353.1|HO014353
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|151394461|gb|EV264332.1|EV264332
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|213604803|gb|DB960526.1|DB960526
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|254347061|gb|GR856731.1|GR856731
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|13790967|gb|BG653558.1|BG653558
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|213601185|gb|DB956493.1|DB956493
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298166882|gb|HO010321.1|HO010321
EST:     GAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: GAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|6718846|gb|AW306493.1|AW306493
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|213589928|gb|DB959483.1|DB959483
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|7691622|gb|AW759746.1|AW759746
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCCGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|192294201|gb|FG986290.1|FG986290
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|209714865|gb|BW682030.1|BW682030
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|15204135|gb|BI426903.1|BI426903
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298171177|gb|HO016209.1|HO016209
EST:     CCCAGATCGATGCCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|7232856|gb|AW568208.1|AW568208
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193632123|gb|FK582771.1|FK582771
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298193077|gb|HO033511.1|HO033511
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|13251909|gb|BG362812.1|BG362812
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193722166|gb|FK660776.1|FK660776
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193476050|gb|FK441347.1|FK441347
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193517028|gb|FK476096.1|FK476096
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|13789074|gb|BG651675.1|BG651675
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|6913538|gb|AW395068.1|AW395068
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193725948|gb|FK658898.1|FK658898
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|33388884|gb|CA852091.1|CA852091
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298187118|gb|HO034267.1|HO034267
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|9564033|gb|BE473542.1|BE473542
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|42722858|gb|CK768757.1|CK768757
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|192301185|gb|FG990165.1|FG990165
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|17963970|gb|BM270712.1|BM270712
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|20207510|gb|BQ133599.1|BQ133599
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|18730141|gb|BM525707.1|BM525707
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|192333172|gb|FK026501.1|FK026501
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|10232448|gb|BE801336.1|BE801336
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|213587758|gb|DB955620.1|DB955620
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193568377|gb|FK523468.1|FK523468
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|31561794|gb|CD487632.1|CD487632
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|10843914|gb|BF067268.1|BF067268
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|5819946|gb|AI988083.1|AI988083
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|23052301|gb|BU577141.1|BU577141
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|207720563|gb|GD703496.1|GD703496
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|298171534|gb|HO016566.1|HO016566
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|6482944|gb|AW202210.1|AW202210
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|193554423|gb|FK511368.1|FK511368
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         ATTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|208182807|gb|GD981029.1|GD981029
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTAGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|192324473|gb|FK016424.1|FK016424
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|4397518|gb|AI496515.1|AI496515
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|8283253|gb|BE020814.1|BE020814
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
EST: gi|209696973|gb|BW660538.1|BW660538
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAG                         GTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgattt ... gtgttatcagGTTACTGACATTTCACTGGCTGATTACATTGGAGTTGCGGCATCCAAGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGAGGATATTGAGgtaccgatttccatgtttctagggtttagttacttagcaaattatatcctaaaaaaagctgtgatatgtattttgttttgatgtttttctgtgttcttatgtgaaatgcgaaactattgttgatttttttttttttgcttgtgttatcag

- - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT