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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtccttttttttttcattccttaaatctggttccttcattatgctttgttttgctctattttcattccttgaaatcctgtcgaattcag

Basic information

species Glycine max
transcript GLYMA12G31740.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330947|gb|FK021660.1|FK021660
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGGAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|192306233|gb|FG996847.1|FG996847
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|192330326|gb|FK019876.1|FK019876
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|10233586|gb|BE802474.1|BE802474
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|151411977|gb|EV281788.1|EV281788
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|13790864|gb|BG653455.1|BG653455
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|151407416|gb|EV277231.1|EV277231
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|24205709|gb|BU964962.1|BU964962
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|13790863|gb|BG653454.1|BG653454
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|298179193|gb|HO027664.1|HO027664
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|298183536|gb|HO028749.1|HO028749
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|209717530|gb|BW679664.1|BW679664
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: gi|151408961|gb|EV278769.1|EV278769
EST:     CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAG                         CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtcctt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCAATCAAAAGgtgagtccttttttttttcattccttaaatctggttccttcattatgctttgttttgctctattttcattccttgaaatcctgtcgaattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA