1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGTGGCGGTGGCCATGATCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttgctcgcttgtttgtttatttgaaagggattttcttcaattaattgtgtaattagtcttacgaggaattgttacgcgtgtaaacag
species | Glycine max |
transcript | GLYMA12G31620.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCEST: gi|209712720|gb|BW679541.1|BW679541
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCEST: gi|213591731|gb|DB973352.1|DB973352
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCEST: gi|209717081|gb|BW671388.1|BW671388
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAEST: gi|209700379|gb|BW660823.1|BW660823
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGA
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCEST: gi|209720729|gb|BW677357.1|BW677357
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCEST: gi|37994085|gb|CF805831.1|CF805831
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCEST: gi|209721013|gb|BW682492.1|BW682492
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
EST: TCCATTTGATATCTTCAGTTCTTTCTTTGGTGGAAGTCCGTTTGGGTCAG GTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
genomic: TCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttg ... gtgtaaacagGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGTGGCGGTGGCCATGATCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGgtatggtttgctcgcttgtttgtttatttgaaagggattttcttcaattaattgtgtaattagtcttacgaggaattgttacgcgtgtaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG