Sequence
atgc intronic sequence ATGC exonic sequenceTAGGAATGATTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCgtacgtaacatatttcttgggactattaacctttgttttcatttaatttctttcattttaggtatatattatgtatacttgccatcggcttattacttta...
Basic information
species | Glycine max |
transcript | GLYMA12G31480.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G31480.2 (Glycine max), 5'ss of exon 2
lower sequence: AT2G27220.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGGAATGATTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCgtacgtaacatatttcttgggactattaacctttgttttcatttaatttctttcattttaggtatatattatgtatacttgccatcggcttattactt-ta-------------------------------------------------------------------------------
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TGGCACATCACCATTCAAATGCTTGGAGACCGCAGAGAGGTTTGCCCGAAAAAGCTGTTTCCGTTCTACGCTCTTGGCTCTTTGAGCATTTTCTTCATCCgtaagtaacgt-tttcttctatct-ttaattcttgttacgatt--attgtcgatatatcagaatgatgggaccttgaagcaaagggaactaactaaggatatggaagctaggatcattacttagttttgtatagacatgcatgctaatgatttagttgtgtcttgttttggtttgtatag
upper sequence: GLYMA12G31480.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 3
TAGGAATGATTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCgtacg----taacatatttcttgggactattaacctttgttttcatttaatttcttt-cattttaggtatatatt-atgtatacttgccatcggcttattacttta---
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TGGGAATGATCCAGCACAATGCTTGGAGACCACAGAGAGGACTTCCTGAGAGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggacttactatacttgtcaacatcacacacaattgtattgcactatcaacacggtattttgcacatgggttcatgtttaac-gttatctgctgga-gttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19453344|gb|BM954754.1|BM954754EST: CGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCC TTATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTTGC
genomic: CGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCgtacgtaaca ... tggcctgcagATATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGGAATGATTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCgtacgtaacatatttcttgggactattaacctttgttttcatttaatttctttcattttaggtatatattatgtatacttgccatcggcttattacttta
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT