Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCATTGGTGTGTACGGTATTCAACATTACTTTTCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCGATGGGAGGCTCTCATgtgagtgatttcatgttttctccaactaaggccatgttttgataaacgaacttctccgtaagcacttataggagaagagaatcagaatgtaaaatgaatt...

Basic information

species Glycine max
transcript GLYMA12G30670.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 2
TTCCCATTGGTGTGTACGGTATTCAACATTACTTTTCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCGATGGGAGGCTCTCATgtgagtgatttca---tgttttctccaactaaggccatgttttgataaacgaacttctccgtaagcacttataggagaagagaatcagaatgtaaa--atgaatt---
|||| |||||| | || ||  | || |||||  |||||||||||||||| |||||||| ||||| || || ||||||||||| ||||| ||   |||||| |||  ||  |   | |||  ||  ||| |    |  |  |  |     |  ||    |     | || |||         |||  | || | |   ||  |    
TTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCATgtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagattgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtag