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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtcttacttttactttactttctctcccttttttctttgttttctgtgtgtttggaaattcaaattgaggattggaatttgggttcag

Basic information

species Glycine max
transcript GLYMA12G30490.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtcttacttttactttactttctctcccttttttctttgtttt-ctgtgtgtttggaaattcaaattgaggattggaatttgggttcag
|| || || ||||| || || ||||| || || || |||||||||||||| || ||||| || ||||||||||||||||||||||| ||||||||    | | || || ||  |||     |  ||| ||  | | || | |     ||   ||| |    || || |  ||  || ||    |||
ACGATCAACCTGGCGGCGATCTGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGACGCGCTCCCTGTGgtaatccctcctctt-ctccactccagatttcttcttcttcttttctaccactagtgcagaattgttgatggacgtgtgtgatgtgca--cag

upper sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtcttacttttactttactttctctcccttttttctttgttttctgtgtgtttggaaattcaaattgaggattggaatttgggttcag
|| || || ||||| || || ||||| || ||||| |||||||||||||| || ||||| || ||||||||||||||||| || || || |||||  | | |    | |  ||  ||| || |  ||  | ||     |      ||  ||   |      ||            ||   |||||
ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTGgtcggccct----tgatctttttttttcgcatttcctactacagctg--acatggctgatgacc---gtttccttccttcccttcttttcag

upper sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G063949_T01 (Zea mays), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtcttacttttactttactttctctcccttttttctttgttttctgtgtgtttggaaattcaaattgaggattggaatttgggttcag
|| || || ||||| || || ||||| || || || |||||||| ||||| |||||||| || |||||||||||||||||||| || || ||||| ||  |  ||  || |   | |  || | |               | |    | |  |  |    | | |  | |     |   || |||
ACCATAAACCTGGCCGCGATCTGCACGCCGGCCGACTACAACACTCGCCCACTTGACACCATCTACAGCAACTTCATCGACGCACTCCCAGTGgtacgattacctacta-tcagcatcatcacacaaacacaaga-----cagaacatgtcaatgtc---actcatcactcactctcctgtccag

upper sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtcttacttttactttactttctctcccttttttctttgtt-ttctgtgtgtttggaaattcaaattgag-gattggaatttgggttcag-------------------------------
|| || ||||| ||||| || || ||||| || |||||||| ||||| ||||||||||| || |||||||| ||||| || || || || |||||  || ||  | |   ||| |  | | |    |||      |   || |||  |||||   | |    ||  | |||  | ||||  |||  |                               
ACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGgtatgtatt-ttatgcttttgcagtttgtttggtttagtggagcaattttgtaagtttgaggaatatttttatgtgatacggattttagttgtgacattgagtggtcattggttttggtatgtag

upper sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctt---acttttactttactttctctccctt-----------ttttctttgttttctgtgtgtttggaaattcaaattgag--gattggaatttgggttcag--------
||||| |||||||| || || || ||||||||||| ||||| || || ||||| || || ||||||||||| ||||| || || ||||| |||||  |   |   |   ||  || | ||  | | | |            || |  ||  ||| | ||| | | | || ||   |  ||  |||  |  ||| | |   |        
ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCCCTTCCAGTGgtatgctgttggatgcttgtttgaattcgttttcgtccaaggataatattgttgttagtttttttgtttctcggaaatctgttgaagctgatgtgcgttttgatgtggctctttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193464260|gb|FK429612.1|FK429612
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTTAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|13477512|gb|BG507365.1|BG507365
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|9203920|gb|BE330144.1|BE330144
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|209702171|gb|BW664233.1|BW664233
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|10710286|gb|BF010010.1|BF010010
EST:     CGCGCCCTCTTGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|193300324|gb|FK266693.1|FK266693
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCCCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|209710480|gb|BW662016.1|BW662016
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|7283473|gb|AW596080.1|AW596080
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|9264592|gb|BE352739.1|BE352739
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|209700873|gb|BW661277.1|BW661277
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|213610338|gb|DB962952.1|DB962952
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGGACAA---GCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|11275155|gb|BF325478.1|BF325478
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|209729039|gb|BW651777.1|BW651777
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|209705408|gb|BW668027.1|BW668027
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|16348560|gb|BI974155.1|BI974155
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|7327204|gb|AW620926.1|AW620926
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTT                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|12774624|gb|BG239551.1|BG239551
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|193300363|gb|FK265388.1|FK265388
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCCCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|7285776|gb|AW598263.1|AW598263
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|120529563|gb|EH257697.1|EH257697
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|163926309|gb|EH039167.1|EH039167
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|120529751|gb|EH257885.1|EH257885
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|213594831|gb|DB959858.1|DB959858
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|213619670|gb|DB965616.1|DB965616
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|15812879|gb|BI785154.1|BI785154
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|298164774|gb|HO014419.1|HO014419
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
EST: gi|213590885|gb|DB973710.1|DB973710
EST:     CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTG                         GTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT
genomic: CGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGgtgcgtctta ... ttgggttcagGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGT