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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCTCGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCGCACGACTTCGGCGCGTGCTTTCACACCCTGgtaaaaaaaaatctaagtcccacgtcgtttaaaagatagtgttactcgagtgtttataaagcttagtatttcgaacgtatgattatttttttatgaag

Basic information

species Glycine max
transcript GLYMA12G30210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g01760.2 (Oryza sativa), 5'ss of exon 1
CAACCTCGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCGCACGACTTCGGCGCGTGCTTTCACACCCTGgtaaaaaaaaatctaagtcccac--gtcgtttaaaagatagtgttactcgagtgtttataaagcttagtatttc--gaacgtatgattatttttttatgaag
| ||||||||    || |    || | ||||||||||  |   ||  | |||||||| |||||||| ||||||||||||||||| ||||| ||  || |||| |      ||||     ||||  || |  |    | |||    |||      |  || | || |  ||||||  || | | | |        ||      
CGACCTCGTCCGGGCCCAGATGCCCTACTGGAACCGCTCCGCCGGCGCGGACCACGTGTTCGTCGCGTCGCACGACTTCGGCGCCTGCTTCCATCCCATGgtcagcttcgatctcttctccactggttgcgtctgcgttaggcggactacttactagatgatgcatgatatttcttgagcttgtaagatgcaagttgctt--

upper sequence: GLYMA12G30210.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G113245_T01 (Zea mays), 5'ss of exon 1
CAACCTCGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCGCACGACTTCGGCGCGTGCTTTCACACCCTGgtaaaaaaa---aatctaagtcccacgtcgtttaaaagat--agtgttactcgagtgtttataaagcttagtatttcgaacgtatgattatttttttatgaag
| ||||||||    |||     || |  ||||| |||  |   ||  ||||||||||||||||||| || |||||||||||||| ||||| ||  || |||| |             ||  | | || | |||    |    ||| |    ||   | |  |   |    |  || || || ||  ||   ||   | | || 
CGACCTCGTCCAGGCCGGGATGCCGTATTGGAATCGCTCCGCCGGGGCCGACCACGTCTTCGTCGCCTCCCACGACTTCGGCGCCTGCTTCCATCCCATGgtgagcgtgtccggcgaaaagctcccgactttttctgggctcagtttgttgcggtgggtggttgcgtcctgc-ttgcgcaccta-aatccattgcgtgtaaa-

upper sequence: GLYMA12G30210.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G035377_T01 (Zea mays), 5'ss of exon 1
CAACCTCGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCGCACGACTTCGGCGCGTGCTTTCACACCCTGgtaaaaaaaaatc--taagtcccacgtcgtttaaaagatagtgttactcgagtgtttataaagcttagtatttcgaacgtatg-attatttttttatgaag-
| ||||||||    ||      || | ||||||||||  |   ||  ||||||| ||||||||||| || |||||||||||||| ||||| ||  || |||| |        |   ||   |  || | ||       |  |||| |  |  || |       || | | |   |   | |   |  |   ||  | | |  
CGACCTCGTCCGGGCCCGGATGCCGTACTGGAACCGCTCCGCCGGGGCCGACCATGTCTTCGTCGCGTCCCACGACTTCGGCGCCTGCTTCCATCCCATGgtgagcgtgccccgcgaaaatctccgactttggctccgtt-tgttgcgtgc-tgctcgcgcgcctaaatctcctgcgtgcaaatacgaaaattgcaagtaac