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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagttaccctcaaacttgtttcaatacataacacgcaaatgcttcccctatgacatgcttgctcctttaattccaattgggaaactgaatctcatcttctacag

Basic information

species Glycine max
transcript GLYMA12G28900.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301802|gb|FG994454.1|FG994454
EST:     GAGGCTGCTGTTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|120534155|gb|EH262288.1|EH262288
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|254347086|gb|GR856756.1|GR856756
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|192306232|gb|FG996846.1|FG996846
EST:     TTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: TTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|254347085|gb|GR856755.1|GR856755
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|120533173|gb|EH261306.1|EH261306
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|42723234|gb|CK769133.1|CK769133
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|298179078|gb|HO027549.1|HO027549
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTCGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|151410281|gb|EV280096.1|EV280096
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTTGCCATTAACT
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATT-GCCATTAACT
EST: gi|120534084|gb|EH262217.1|EH262217
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|151395888|gb|EV265765.1|EV265765
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATCGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|9205069|gb|BE331293.1|BE331293
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|6134669|gb|AW133062.1|AW133062
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|151398076|gb|EV267954.1|EV267954
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|192306231|gb|FG996845.1|FG996845
EST:     GAGGCTGCTGTTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|298166796|gb|HO010235.1|HO010235
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|298164410|gb|HO014055.1|HO014055
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
EST: gi|21994382|gb|BQ785910.1|BQ785910
EST:     GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG                         CTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... tcttctacagCTTTAAAGTGTGTTGTTACTCCGAACCCAGCTGTGGAATTGCCATTAACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagttaccctcaaacttgtttcaatacataacacgcaaatgcttcccctatgacatgcttgctcctttaattccaattgggaaactgaatctcatcttctacag

- - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - -  TGCTGC