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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgtaatatggctatgctttgcttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcag

Basic information

species Glycine max
transcript GLYMA12G28670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299444|gb|FG990782.1|FG990782
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|24136950|gb|BU927460.1|BU927460
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|298172183|gb|HO021775.1|HO021775
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|192315107|gb|FK009931.1|FK009931
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|6134030|gb|AW132480.1|AW132480
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|192333250|gb|FK026131.1|FK026131
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|213618494|gb|DB963395.1|DB963395
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|298184141|gb|HO029354.1|HO029354
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|41145772|gb|CK605983.1|CK605983
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAACCGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|213604365|gb|DB970597.1|DB970597
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|24135648|gb|BU926158.1|BU926158
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|213587115|gb|DB959536.1|DB959536
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|7233496|gb|AW568841.1|AW568841
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|209709460|gb|BW668376.1|BW668376
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|298191545|gb|HO039024.1|HO039024
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|208215289|gb|GE011072.1|GE011072
EST:     TGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: TGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|6134008|gb|AW132458.1|AW132458
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: gi|15814101|gb|BI786376.1|BI786376
EST:     GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG                         GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgtaatatggctatgctttgcttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG