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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagcttgaaatttatgacaattaggtttggcatttatgcttgctggattgtattcatggaaacttatttggtactgcag

Basic information

species Glycine max
transcript GLYMA12G23480.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagcttgaaatttatgacaattaggtttggcatttatgcttgctggattgtattcatggaaacttatttggtactgcag
 || || || ||||| || || ||||| ||||| ||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |||||||| |||||   |||||    |   |     | |   |  |  |  | | |||    |||| ||   |   || |  | ||     ||||
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgtagtagctttttctcgttttttgtcaatct--gtgtcaaagtttgtca-attgcatagtttctaattcttgtgtgtgagcag

upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0014g02500.t01 (Vitis vinifera), 5'ss of exon 3
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtg-------agagcttgaaatttatgacaa---ttaggtttggcatttatgcttgc-----tggattgtattcatggaaacttatttggtactgcag------
 || || || || |||||| |||| ||||||||||||||||| || ||||| ||||||||||| || || |||||||| || || || || |||||||||||        |  | |  ||  | ||||  |   | | |||    | ||   |   |     |||  | |   |   || |  ||||||  ||||||       
GACTAAAACTGCCGTTTCTTCTAAACCAATTGTAATGAGAGCAGAATATGCTCATTGTCCTAATCTCACCATTATTGATACCCCGGGTTTCGTTCTTAAGgtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacatatttggtctttgcactaagataaatatttgaaactgcattggcag

upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S5_205V6.1 (Physcomitrella patens), 5'ss of exon 2
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgag----agcttgaaatttat---------gacaattaggtttggcatttatgcttgctggattgtattca--tggaaacttatttggtactgcag--
|      || || ||   | | ||||||||||| ||| |||| |||||||||  |||||| || || || || |||||||||||||| ||||| |||||||| ||    |   |  | |||            | | | |  | |   |||||  | || |    |  ||||   |   |||   |       || |   
ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccattttgcttgtttccaaagagtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg