Sequence
atgc intronic sequence ATGC exonic sequenceCGATTGATGATCCGGCATTGGCAACTCTCTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGgtataatattttcctcattttttccctatcaaaatgtccaaaattttgatctatttcactcacaaattgactgaaagtacttccatataattgcatttca...
Basic information
species | Glycine max |
transcript | GLYMA12G22680.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G22680.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
CGATTGATGATCCGGCATTGGCAACTCTCTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGgtataatattttcctcattttttccctatcaaaatgtccaaaattttgatctatttcactcacaaattgactgaaagtacttccatataattgcatttca--------
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CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgt-cagttctttctttcatttttggctgtcc---ttgctgatgtttt---ttcattagcatgaaaattcattcata-catttgtatatcagtatatggcatccattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208091825|gb|GD887140.1|GD887140EST: AACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAG AAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCG
genomic: AACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGgtataatatt ... tcttttacagAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGATTGATGATCCGGCATTGGCAACTCTCTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGgtataatattttcctcattttttccctatcaaaatgtccaaaattttgatctatttcactcacaaattgactgaaagtacttccatataattgcatttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctatc