Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtattacaacatatagatagagaactagtttattttttcatgtttttttttaccgttgatagaacttcagtgcttctacttttgaatatacagtta...

Basic information

species Glycine max
transcript GLYMA12G15420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15420.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtattacaacatatagatagagaactagtttattttttcatgtttttttttaccgttgatagaacttcagtgcttctacttttgaatata-cagtta
  ||||||||  | || || || ||||| ||| |||| || |||||||| |||| ||| |||||||||||||||||  || |||||||||  | |||  | |   |  ||   || |    |  ||  | | ||  | ||    || ||| |  | |   ||    |  ||| | | |   | | 
TCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttattcaatctctttctcaaggtgtattgatctgatttctatattgatatagtaatgttagtatct-atctctatatcccttggacacagtgggtg

upper sequence: GLYMA12G15420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0014g01260.t01 (Vitis vinifera), 5'ss of exon 2
ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtattacaacatatagatagagaactagtttattttttcatgtttttttttaccgttgatagaacttcagtgcttctact---tttgaatatacagtta--
  | ||| |||||||| | ||| || |||||||||||||| |||||||| | || ||| ||||| || || ||||||||  ||||||||||     |  | |   |      |||    | |     |      | || |  | | ||  ||  | |||||   |      | ||||||  ||||    
CAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTCgtgagtac----atctgtgtttctgtctctaaaacactagagaaacgaactattcattgat-atgaaatgtaagtgcaagtgaaggatatgaatagtcagtccaa

upper sequence: GLYMA12G15420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 2
ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtattac--aacatatagatagagaactagttta----ttttttcatgtttttttttaccgttgatagaacttcagtgcttctacttttgaatatacagtta
 | ||||||||||||| ||||| || ||||||||||| || || ||||| | || ||| ||||| || || |||||||| ||||||||||||  |      | |   |  | || | |  |     | | ||  |||||  ||||||   | || ||| |  |    ||| | |||| | | |||  |  
CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttac---ttatggaaatataaaaattc-attttttattttacttt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664422|gb|BI701793.1|BI701793
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10847759|gb|BF070395.1|BF070395
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298163995|gb|HO013640.1|HO013640
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298193081|gb|HO033515.1|HO033515
EST:     CACTTCATTGAACACTAAGAGGCTGGATGAT-A--CTGAGGATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|120495398|gb|EH223565.1|EH223565
EST:     CACTTCATTGAACACTAAGAGGCTGGAGGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|120495990|gb|EH224157.1|EH224157
EST:     CACTTCATTGAACACTAAGAGGCTGGAGGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|6725295|gb|AW309694.1|AW309694
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298198641|gb|HO040180.1|HO040180
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10235229|gb|BE804176.1|BE804176
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10235977|gb|BE804865.1|BE804865
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|4285923|gb|AI440973.1|AI440973
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGNGAAAGG-ACCAACTGGACTTAAGAAG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAA-GGTACCAACTGAACTTAAGAAG
EST: gi|10844320|gb|BF067629.1|BF067629
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTACGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|23730351|gb|BU763268.1|BU763268
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|120495988|gb|EH224155.1|EH224155
EST:     CACTTCATTGAACACTAAGAGGCTGGAGGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|120495264|gb|EH223431.1|EH223431
EST:     CACTTCATTGAACACTAAGAGGCTGGAGGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|48575159|gb|CO036264.1|CO036264
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTAC
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTAC
EST: gi|31463062|gb|CD405090.1|CD405090
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7685112|gb|AW755760.1|AW755760
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|27809265|gb|CB063687.1|CB063687
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|19346115|gb|BM890995.1|BM890995
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|209716104|gb|BW668643.1|BW668643
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|31461055|gb|CD403083.1|CD403083
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|31310981|gb|CD396184.1|CD396184
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|26269232|gb|CA820295.1|CA820295
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254331088|gb|GR842353.1|GR842353
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|31459179|gb|CD401207.1|CD401207
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|21887676|gb|BQ740889.1|BQ740889
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|15000360|gb|BI321174.1|BI321174
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|17023283|gb|BM094317.1|BM094317
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|12773120|gb|BG238047.1|BG238047
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|33389507|gb|CA852714.1|CA852714
EST:     CACTTCATTGAACACTGAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|26047393|gb|CA784200.1|CA784200
EST:     GATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: GATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7028127|gb|AW457910.1|AW457910
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7146182|gb|AW508167.1|AW508167
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298168480|gb|HO009410.1|HO009410
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|11687714|gb|BF595390.1|BF595390
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10845945|gb|BF068955.1|BF068955
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|27446138|gb|CA953261.1|CA953261
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|193345969|gb|FK310455.1|FK310455
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|11688441|gb|BF596117.1|BF596117
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7692167|gb|AW760281.1|AW760281
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|11688433|gb|BF596109.1|BF596109
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298183608|gb|HO028821.1|HO028821
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7691241|gb|AW759372.1|AW759372
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254336558|gb|GR842737.1|GR842737
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|27446370|gb|CA953493.1|CA953493
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298179952|gb|HO025167.1|HO025167
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|151400091|gb|EV269905.1|EV269905
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254326155|gb|GR840747.1|GR840747
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298167378|gb|HO012641.1|HO012641
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|14259931|gb|BG882839.1|BG882839
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|6482446|gb|AW201705.1|AW201705
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|6069595|gb|AW099256.1|AW099256
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|21256329|gb|BQ453217.1|BQ453217
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|9440041|gb|BE440552.1|BE440552
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298163845|gb|HO012578.1|HO012578
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298183640|gb|HO028853.1|HO028853
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10846727|gb|BF071410.1|BF071410
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|23730590|gb|BU763381.1|BU763381
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|14012141|gb|BG727063.1|BG727063
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|11274236|gb|BF324604.1|BF324604
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|19453675|gb|BM955085.1|BM955085
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|19348136|gb|BM892668.1|BM892668
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC                         ATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtatta ... ttgggtgcagATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtattacaacatatagatagagaactagtttattttttcatgtttttttttaccgttgatagaacttcagtgcttctacttttgaatatacagtta

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA