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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCGAATCAGCCTTTGAGGAGGCCTATTACGGTAGATTCCGCTCTTATGAATCCAAATTCCAGAATCCTTGCTTTGAAAGGTTGGCTACTATTCCGTTgtattcttctcatgaacttgtgactcgtgtttgtggctagtaatgatgatgtggatttgtggataatataactaccggtattttggtattgattcgaatt...

Basic information

species Glycine max
transcript GLYMA12G15060.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15060.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 2
------------------ATGCCGAATCAGCCTTTGAGGAGGCCTATTACGGTAGATTCCGCTCTTATGAATCCAAATTCCAGAATCCTTGCTTTGAAAGGTTGGCTACTATTCCGTTgtattcttctcatgaacttgtgactcgtgtttgtggctagtaatgatgatgtggatttgtggataatataactaccggtattttggtattgattcgaatt
                  |||||||  |||||||| ||||||||||| || |  ||||| ||||||||||| ||||| || || |||||||| || ||||||     ||| || | ||  || |   | || | ||| | || |   |     | |  |  |  ||| ||| ||     | ||  | | | |   ||  ||   ||            
GTAATTATCGATATGAATATGCCGATGCAGCCTTTAAGGAGGCCTATAACTGCTGATTCTGCTCTTATGAACCCAAACTCGAGGATCCTTGCCTTAAAAGgtattacactgtttccttcgat-cgcattatca-cttataacacccata---agattctccttttgaagtgtatgatcagttataagacccataagtggttcc-ta------------

upper sequence: GLYMA12G15060.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 2
------------------ATGCCGAATCAGCCTTTGAGGAGGCCTATTACGGTAGATTCCGCTCTTATGAATCCAAATTCCAGAATCCTTGCTTTGAAAGGTTGGCTACTATTCCGTTgtattctt--ctcatgaacttgtgactcgtgtttgtggctagtaatgatgatgtggatttgtggataatataactaccggtattttggtattgattcgaatt
                  |||||||  |||||| | |||||||||||||| | ||| || ||||||||||| ||||| || |  |||||||| |||||||||     | | || | ||  ||      | ||| |||   |  ||||  || || | |  ||||    |  |   ||  ||   | | |      |  |||||  |||            
GTAATTATAGATATGAATATGCCGATGCAGCCTCTTAGGAGGCCTATTACTGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAGgtacttgattttttcctttgatctaaaacccat-aacggtttcctcgaattcgtagttcataat--ccacttatcttgatgttcactttttacttcaatatttatgtag-----------