1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgtttttctctcctttttttaacggtttctctatgctatagtgcatttttaattgggaattacagttgatgcttgtgattcttggataatactcgga...
species | Glycine max |
transcript | GLYMA12G10510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTG AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAAEST: gi|209696942|gb|BW660507.1|BW660507
genomic: GAATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgttttt ... ttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAA
EST: GAATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTG AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAAEST: gi|18040023|gb|BM308317.1|BM308317
genomic: GAATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgttttt ... ttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAA
EST: AATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTG AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAAEST: gi|23730734|gb|BU763465.1|BU763465
genomic: AATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgttttt ... ttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAA
EST: GAATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTG AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAAEST: gi|213601006|gb|DB983681.1|DB983681
genomic: GAATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgttttt ... ttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAA
EST: AATTATTGCGGTGGCTAAGAGCTCATTCAAGATGGAACACCGAATTG AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAA
genomic: AATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgttttt ... ttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTATTGCCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgtttttctctcctttttttaacggtttctctatgctatagtgcatttttaattgggaattacagttgatgcttgtgattcttggataatactcgga
- - - - - - - - AGAGCT
- - - - - - - - - AGCTCA
- - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcct