1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatatattatatcactctttttggtcaataccctctttctgacgctaagggcaactatgaatgatataatataatttctttatagtagtactatt...
species | Glycine max |
transcript | GLYMA12G10210.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|27425967|gb|CA937487.1|CA937487
genomic: AGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|31474066|gb|CD416094.1|CD416094
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: AAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|298193194|gb|HO033628.1|HO033628
genomic: AAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|192314511|gb|FK008103.1|FK008103
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: AGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|31467872|gb|CD409900.1|CD409900
genomic: AGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: TTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|192299092|gb|FG990406.1|FG990406
genomic: TTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGA-CC-C-- T--CAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|298182663|gb|HO031398.1|HO031398
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|31471406|gb|CD413434.1|CD413434
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|23057436|gb|BU578110.1|BU578110
genomic: CTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|7691759|gb|AW759880.1|AW759880
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGA-CC-C-- T--CAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGAEST: gi|298183030|gb|HO028293.1|HO028293
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
EST: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAG TCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
genomic: CAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatat ... gctgattaagTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGgtgtgtatatattatatcactctttttggtcaataccctctttctgacgctaagggcaactatgaatgatataatataatttctttatagtagtactatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT