1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGgtatagacatcatcctctgctttttcaagcatctcagtttcaggcaactgatctagttattatatgagaaatgttttcattttcaccggcattgtattaa...
species | Glycine max |
transcript | GLYMA12G09990.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAG ATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGEST: gi|19935121|gb|BQ080151.1|BQ080151
genomic: AAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGgtatagacat ... gaatatgcagATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGG
EST: AAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAG ATTGTCAGTAAAGAAAGTGGAEST: gi|21677028|gb|BQ629379.1|BQ629379
genomic: AAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGgtatagacat ... gaatatgcagATTGTCAGTAAAGAAGGTGGA
EST: AAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAG ATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGG
genomic: AAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGgtatagacat ... gaatatgcagATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGgtatagacatcatcctctgctttttcaagcatctcagtttcaggcaactgatctagttattatatgagaaatgttttcattttcaccggcattgtattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA