1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTTTGTGAAATCGCCAGTGAGTGCTAGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGgtaattttagtacaagattaataatttgtctgattttgaaattaaaaaagaaaaaaaaatgaatgcatgaatgatgacatgacatgtgtgtgtgtatatatatatatatgatggttgaag
species | Glycine max |
transcript | GLYMA12G09730.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAATGGGAGGGTTACATG CTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTGATTGGGTTTGGCTTEST: gi|22931458|gb|BU548597.1|BU548597
genomic: GGAAATGGGAGGGTTACATGgtaattttag ... atggttgaagCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATT
EST: GAGGGTTACATG CTTCGAGAGGAATTGCCTGCGGGCAGATTACAGTGTGATTGGGTTTGGGTTEST: gi|6482824|gb|AW202036.1|AW202036
genomic: GAGGGTTACATGgtaattttag ... atggttgaagCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATT
EST: TGGCAATGGGAAATGGGAGGGTTACATG CTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATTEST: gi|10844463|gb|BF067734.1|BF067734
genomic: TGGCAATGGGAAATGGGAGGGTTACATGgtaattttag ... atggttgaagCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATT
EST: AGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATG CTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATTEST: gi|31307026|gb|CD392229.1|CD392229
genomic: AGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGgtaattttag ... atggttgaagCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATT
EST: ATGAATACCTTGGGGCAAGCTGTGGCAATGGGAAATGGGAGGGTTACATG CTTCGAGAGGAATTGGCTGCGGTCAGATTACAGTGTGATTGGGTTTGGGTT
genomic: AGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGgtaattttag ... atggttgaagCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTGTGAAATCGCCAGTGAGTGCTAGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGgtaattttagtacaagattaataatttgtctgattttgaaattaaaaaagaaaaaaaaatgaatgcatgaatgatgacatgacatgtgtgtgtgtatatatatatatatgatggttgaag
- - - - - - - - - - - - - - - - - - - - - AAGCTG