1 5' 3' | 2 5' 3' | 3 5' 3' |
ACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcgaaagcttggtattattgtgctttggattgaaagttttagttttagtgtaatgtattgctattggagcaagtttgtgtgttcagaagttttt...
species | Glycine max |
transcript | GLYMA12G09600.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|33388268|gb|CA851475.1|CA851475
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|31471738|gb|CD413766.1|CD413766
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAAAGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|151411066|gb|EV280877.1|EV280877
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATGCTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAGGTTGGAGAAGCTTGCTCGCAAGEST: gi|151398999|gb|EV268870.1|EV268870
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|10253437|gb|BE821203.1|BE821203
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|192301404|gb|FG998396.1|FG998396
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|151412650|gb|EV282462.1|EV282462
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|16346323|gb|BI971918.1|BI971918
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|192326512|gb|FK018819.1|FK018819
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|31468078|gb|CD410106.1|CD410106
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcgaaagcttggtattattgtgctttggattgaaagttttagttttagtgtaatgtattgctattggagcaagtttgtgtgttcagaagttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG