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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcgaaagcttggtattattgtgctttggattgaaagttttagttttagtgtaatgtattgctattggagcaagtttgtgtgttcagaagttttt...

Basic information

species Glycine max
transcript GLYMA12G09600.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33388268|gb|CA851475.1|CA851475
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|16346323|gb|BI971918.1|BI971918
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|151398999|gb|EV268870.1|EV268870
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|192326512|gb|FK018819.1|FK018819
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|5126760|gb|AI748496.1|AI748496
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|10253437|gb|BE821203.1|BE821203
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|192301404|gb|FG998396.1|FG998396
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|151411066|gb|EV280877.1|EV280877
EST:     GAAAAATGCTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAGGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|151411525|gb|EV281336.1|EV281336
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|151412650|gb|EV282462.1|EV282462
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|33390403|gb|CA853598.1|CA853598
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|31471738|gb|CD413766.1|CD413766
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAAAGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: gi|31468078|gb|CD410106.1|CD410106
EST:     GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG                         AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcgaaagcttggtattattgtgctttggattgaaagttttagttttagtgtaatgtattgctattggagcaagtttgtgtgttcagaagttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG