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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGCCATGTGGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCTCGTGAGTTCGAGCCCGAAGTCTCCACAAGACCTCCCAGTGCTAGgtacgtgccctgctgctgactcatcatcacgttgcttatatctcatcatgtcataataatgtttgttgatatcgcggatgctgtttcaagttcggtcaca...

Basic information

species Glycine max
transcript GLYMA12G09560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0080g00580.t01 (Vitis vinifera), 5'ss of exon 1
TGCGCCATGTGGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCTCGTGAGTTCGAGCCCGAAGTCTCCACAAGACCTCCCAGTGCTAGgtacgtgccctgctg--ctgactcatcatcacgttgcttatatctcatcatgtcataataatgtttgttgatatcgcggatgctgtttcaag---ttcggtcaca
|||||||||| |||||||| ||||||||  |||||||||| ||| |||||||||||  ||||||||| || |||||  |||  ||  |||| ||||| ||||  |||   |      ||   |    ||   | |     | |  | |  | |     |  || ||||  || | | |||   || || | |   || | ||   
TGCGCCATGTTGCGCATGTTACCTTCGATCGGTTCAATGGTTTCCTGGGCTTGCCTGTTGAGTTCGAACCTGAAGTTCCCAGGAGGGCTCCGAGTGCCAGgtgagtgttttttccatctttttggaaattgggatatgggttttgcgtt-ttttgctgttgtggttgtgaat-ttgtggagcttgattgatgggttttgctc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058065|gb|CA800979.1|CA800979
EST:     TTGCCTCGTGAGTTCGAGCCCGAAGTCTCCACAAGACCTCCCAGTGCTAG                         TGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACAC
genomic: TTGCCTCGTGAGTTCGAGCCCGAAGTCTCCACAAGACCTCCCAGTGCTAGgtacgtgccc ... tcacgtgtagTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACAC