1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttattgatatcctattgtttgagattagttaagtacctgctttggtgagcggttgcaaaattggttctgaatgaaataggttttggttgaaatt...
species | Glycine max |
transcript | GLYMA12G09300.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193679983|gb|FK620711.1|FK620711
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|208107476|gb|GD903835.1|GD903835
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: CGTATTTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|207713684|gb|GD695359.1|GD695359
genomic: CGTA-TTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|208248151|gb|GE049851.1|GE049851
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: CGTATTTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|208163277|gb|GD961069.1|GD961069
genomic: CGTA-TTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193526444|gb|FK483774.1|FK483774
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAEST: gi|207791408|gb|GD763203.1|GD763203
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193562044|gb|FK521221.1|FK521221
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACG-TTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193564864|gb|FK520077.1|FK520077
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TATTTGGTCCAAGGCCGTTTGTCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|4296956|gb|AI442549.1|AI442549
genomic: TATTTGG-CCAAGGCCG-TTG-CCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|207815901|gb|GD788786.1|GD788786
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTEST: gi|193547969|gb|FK505138.1|FK505138
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAEST: gi|207842112|gb|GD816698.1|GD816698
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCA
EST: CGTTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193304515|gb|FK273134.1|FK273134
genomic: CG-TATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|207740471|gb|GD715291.1|GD715291
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG CGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGEST: gi|208158109|gb|GD957834.1|GD957834
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAG
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGAATAGGGAGAAAGTGAAAAGEST: gi|208294243|gb|GE092116.1|GE092116
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGG-AT-GGGAGAAAGTGAAAAG
EST: CGTATTTGGCCAAGGCCGTTGCCACGAGAAGCTGATTCTACGTTTT-CAG TGTTTCTTCGTCAGACCTEST: gi|9987215|gb|BE661323.1|BE661323
genomic: CGTATTTGGCCAAGGCCGTTGCCAC-AGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCT
EST: CGTATTTGGC-AAGGCCGTTGCCACAGAAGCTGATTCTACGNTTTTTCAG TGGTTCTTCGTCAGACCTGGNTTTCAAAAGTGGATGGGAGAAAGTGAAAAEST: gi|193712163|gb|FK654870.1|FK654870
genomic: CGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACG-TTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGG-TTTCAAA-GTGGATGGGAGAAAGTGAAAA
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAEST: gi|208201547|gb|GD996106.1|GD996106
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193673533|gb|FK617758.1|FK617758
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: CGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193646399|gb|FK592704.1|FK592704
genomic: CGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|208278946|gb|GE077493.1|GE077493
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTEST: gi|208321492|gb|GE119545.1|GE119545
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAEST: gi|208270912|gb|GE067792.1|GE067792
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAA
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193309576|gb|FK277140.1|FK277140
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTCTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193597928|gb|FK552834.1|FK552834
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|207788082|gb|GD760172.1|GD760172
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACG-TTTTCGG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|208168018|gb|GD966076.1|GD966076
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAA-GTGAAAEST: gi|193400790|gb|FK366261.1|FK366261
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|193715119|gb|FK650228.1|FK650228
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTT-CAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAA-GTGAAAEST: gi|208107948|gb|GD902026.1|GD902026
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: TATTTTGGCCAAGGCCGTTTGCCACAGAAGCTGATTCTACGTTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCEST: gi|193532173|gb|FK491909.1|FK491909
genomic: TA-TTTGGCCAAGGCCG-TTGCCACAGAAGCTGATTCTACG-TTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGC
EST: CCACAGAAGCTGATTCTTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|19346337|gb|BM891217.1|BM891217
genomic: CCACAGAAGCTGATTC-TACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTEST: gi|208295762|gb|GE093075.1|GE093075
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: TCGTATTTGGCCAAGGCCGTTGCCACAGAAACTGATTCTACGTTTTTCAG TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttattgatatcctattgtttgagattagttaagtacctgctttggtgagcggttgcaaaattggttctgaatgaaataggttttggttgaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT