Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttggtcatgtgttatgacgtgataaacttttatgtaagtacttataagagtagaaaataagaatagaaagtgaattgaatttcttgtgtaagc...

Basic information

species Glycine max
transcript GLYMA12G09200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01530.t01 (Vitis vinifera), 5'ss of exon 2
AAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgt----aaagtttggtcatgtgttatgacgtgataaacttttatgtaagtacttataagagtagaaaataagaatagaaa-------gtgaattgaatttcttgtgtaagc------------------------------
||||||||||||||| |||||||||| || || ||||||||| |||| ||||||||    || ||||| ||||| ||||| |||||||| || || ||||||    |||| ||      || ||   |  || | |    ||  ||  | |   |   |  | |       |  |            || | | |  ||| || | | |                                
AAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATTTTGATCTCATCCTTGCAATGGACAAGCAAAATAGAGgtgggaaaagattaagagggtatt-caagttggtgactgcttgggtttgaatcaaactggatggtgctctggtgtcttttcattcttgtaattggttttttttttattaattatttcttttggtgttgatgttgcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316065|gb|FK008890.1|FK008890
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|298167178|gb|HO010617.1|HO010617
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCCTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|192332259|gb|FK023908.1|FK023908
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|213603562|gb|DB962708.1|DB962708
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|13252385|gb|BG363288.1|BG363288
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|27424689|gb|CA936209.1|CA936209
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|213602386|gb|DB980449.1|DB980449
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACACATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|298194521|gb|HO042993.1|HO042993
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGAC
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGAC
EST: gi|192316064|gb|FK008889.1|FK008889
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|27425137|gb|CA936657.1|CA936657
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|298165521|gb|HO011570.1|HO011570
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|33388402|gb|CA851609.1|CA851609
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|192332260|gb|FK023909.1|FK023909
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|17401417|gb|BM178199.1|BM178199
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: gi|24205701|gb|BU964954.1|BU964954
EST:     TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG                         AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG