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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctacactgcaccaattattcctgaatgcccttaattttgtcaccttttggaatgttaattcattagtaaatttttttgatgctgacttagtctgc...

Basic information

species Glycine max
transcript GLYMA12G07740.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598753|gb|DB964291.1|DB964291
EST:     TTANATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAG                         GTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
genomic: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctaca ... tgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
EST: gi|213593777|gb|DB957897.1|DB957897
EST:     TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAG                         GTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
genomic: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctaca ... tgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
EST: gi|209700338|gb|BW664375.1|BW664375
EST:     TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAG                         GTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
genomic: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctaca ... tgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctacactgcaccaattattcctgaatgcccttaattttgtcaccttttggaatgttaattcattagtaaatttttttgatgctgacttagtctgc

- - ATGCTG