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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgtgttcctcactttaaacaattagttgaacaaaattaaaattcagtggttattttttcaatagtattggaattcagcatgtttaggaagaacattgtgtaattagggagaagactatgttgtgtgaaaaattaggttggtattggtttttgccgtgtgtgacttgagttagagtttttttgtgtgcag

Basic information

species Glycine max
transcript GLYMA12G07160.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204245|gb|BI427013.1|BI427013
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192325956|gb|FK016633.1|FK016633
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298169507|gb|HO020867.1|HO020867
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|15662555|gb|BI699926.1|BI699926
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298199222|gb|HO042585.1|HO042585
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|6846652|gb|AW348942.1|AW348942
EST:     TAGGAATATNCGACAGGTAGAGTTTTTTCAATGGCNNNNAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCANNNNNNGAAGACTGCTAAGGCAG
genomic: TAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192334787|gb|FK025278.1|FK025278
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAGGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|31459892|gb|CD401920.1|CD401920
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCTAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192333770|gb|FK025493.1|FK025493
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGGTCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|15662575|gb|BI699946.1|BI699946
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192322634|gb|FK014371.1|FK014371
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192304386|gb|FG997828.1|FG997828
EST:     GTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|7589639|gb|AW705409.1|AW705409
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192298569|gb|FG989230.1|FG989230
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192309839|gb|FK002951.1|FK002951
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|9986846|gb|BE660954.1|BE660954
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|27425020|gb|CA936540.1|CA936540
EST:     GGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298185275|gb|HO030488.1|HO030488
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|31456055|gb|CD398083.1|CD398083
EST:     ATATTCGACAGCTAGAGTTTCTTCAATGGCTCCTAAAC                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: ATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298171333|gb|HO016365.1|HO016365
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298171197|gb|HO016229.1|HO016229
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAGGAATGATCCAAAGG-CCAGGCCTTGAAGGCTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298185070|gb|HO030283.1|HO030283
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298182573|gb|HO031308.1|HO031308
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298179669|gb|HO024884.1|HO024884
EST:     GGATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCTTAAAG                         TTGATAAGAGGAATGATCCAACGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|7588678|gb|AW704468.1|AW704468
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|4405507|gb|AI507656.1|AI507656
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298189111|gb|HO037514.1|HO037514
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|213607106|gb|DB965076.1|DB965076
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|213620283|gb|DB961428.1|DB961428
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|5677357|gb|AI938487.1|AI938487
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|15814133|gb|BI786408.1|BI786408
EST:     GAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298175473|gb|HO015106.1|HO015106
EST:     GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG