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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATAACCAGTGCATTAGTGAATGGCAGCGCTCTTCGTTTCCACTTACCTAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctccagcttctttcttttctcctttattttttaaaaaaatactaataataattgcactttgcaccttttgagttttgataattcatcttgaatgttcaattttaactgttagttttttcattttgttttgcaatacag

Basic information

species Glycine max
transcript GLYMA12G07020.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14516430|gb|BI095102.1|BI095102
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|21889425|gb|BQ742638.1|BQ742638
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|192296082|gb|FG989448.1|FG989448
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|298173279|gb|HO016615.1|HO016615
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|22539767|gb|BU089610.1|BU089610
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|298185585|gb|HO030798.1|HO030798
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|298163570|gb|HO012303.1|HO012303
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|192307333|gb|FK000717.1|FK000717
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: gi|192310264|gb|FK000716.1|FK000716
EST:     TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG                         GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC