1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGTCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaaattatgtcaatttctagagccaaagaaagcatgacaaatttgcaaatttactgaaacctttaaattatgtaattcactttgtttgaaaca...
species | Glycine max |
transcript | GLYMA12G06920.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCCACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTEST: gi|10847282|gb|BF071525.1|BF071525
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATT
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCTCTGACAAAGCGACAG GTTGAATCTACATTGGCTATGCAAAATCTTTACCCAACA-TTAAGGCCAEST: gi|120533265|gb|EH261398.1|EH261398
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCA
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTEST: gi|120533673|gb|EH261806.1|EH261806
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATT
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTEST: gi|20207804|gb|BQ133893.1|BQ133893
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATT
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTEST: gi|120533657|gb|EH261790.1|EH261790
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATT
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTEST: gi|209720713|gb|BW677531.1|BW677531
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATT
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTEST: gi|6134125|gb|AW132518.1|AW132518
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATT
EST: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAG GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAA
genomic: TGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaa ... atgtatacagGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaaattatgtcaatttctagagccaaagaaagcatgacaaatttgcaaatttactgaaacctttaaattatgtaattcactttgtttgaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagaaa