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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGgtattgttctgtttacatgcctgttataatgtttttcagacgataaaagttcagaattcctgtgattttttttaaatgacacttttactttcattcag

Basic information

species Glycine max
transcript GLYMA12G04780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04780.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGgtattgttctgtttacatgcctgttataatgtttttcagacgataaaagttcagaattcctgtgattttttttaaatgacacttttactttcattcag
      |||||||||| ||||| || || ||||| ||||| |||||||| ||||| || |||||| || || | ||||||||||| ||  |||||| |||  |  | |     | ||  |    |  ||||  ||  ||   |    | ||  |||||  | | |   ||   |  |    ||||     |   | ||
------AGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCTCAAAGTCAAAGgtgctaatccaaacaaactcaaatgaatt--agtaaactctaatttggaattaatctaacagtt---agttctttctttgttccttgattag

upper sequence: GLYMA12G04780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 2
AAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGgta--ttgttctgtttacatg--cctgttat--aatgtttttcagacgataaaagttcagaattcctgtgattttttttaaatgacacttttactttcattcag-------
| ||  ||| |||||| || ||||| |||||||| |||||||||||||| ||||| || |||||  |  | || || ||||||||||||||| | | ||||||     |  | |  || ||   |||| ||  ||||||||   ||  || | | |  | |  |||| |    |   | |     |  ||  | || || |          
AGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCCCAAAGgtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacag