1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGAACTTCGAGGAGCAGCAGGCCGTTGATGCATTTCGCCAAGCCTTGATCATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttgcccaaagtaattttcttcatttcccgaaatggaatgttttgcttaattttcttcttcttattttttttacttttacag
species | Glycine max |
transcript | GLYMA12G04460.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCEST: gi|193710828|gb|FK644683.1|FK644683
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGC
EST: ATGGAGGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGCEST: gi|208034208|gb|GD837632.1|GD837632
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
EST: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGEST: gi|193512335|gb|FK468217.1|FK468217
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGG
EST: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGCEST: gi|151397966|gb|EV267839.1|EV267839
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
EST: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCEST: gi|14259642|gb|BG882550.1|BG882550
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
EST: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCEST: gi|193685314|gb|FK625788.1|FK625788
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
EST: ATGGAAGAATTGCTTCCTGAGAAACACGATGATTACCACGTCTTGTTAAG GTTCCTGAAAGCGAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCEST: gi|193583563|gb|FK541059.1|FK541059
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
EST: ATGGAGGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGCEST: gi|208239380|gb|GE041252.1|GE041252
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
EST: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAG GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGC
genomic: ATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttg ... acttttacagGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACTTCGAGGAGCAGCAGGCCGTTGATGCATTTCGCCAAGCCTTGATCATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGgtgtgccttgcccaaagtaattttcttcatttcccgaaatggaatgttttgcttaattttcttcttcttattttttttacttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA