Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctatgcatttaatcagggatttcaatgaaaaatcagttctcttagtattgccaatattagattttaatttgctatgttcttcaaattgctttga...

Basic information

species Glycine max
transcript GLYMA12G04380.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9983441|gb|BE657549.1|BE657549
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACACCCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298168121|gb|HO013384.1|HO013384
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|9902153|gb|BE611121.1|BE611121
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|10237202|gb|BE806090.1|BE806090
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|19937846|gb|BQ081442.1|BQ081442
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6913531|gb|AW395061.1|AW395061
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6665823|gb|AW277273.1|AW277273
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192302463|gb|FG994799.1|FG994799
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7640359|gb|AW734662.1|AW734662
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|16346057|gb|BI971652.1|BI971652
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4293239|gb|AI442019.1|AI442019
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|19052898|gb|BM731565.1|BM731565
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|209716143|gb|BW662328.1|BW662328
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|14259389|gb|BG882297.1|BG882297
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGGGCACAAGACAACAACTCTCTGATGACAAAAGGCTTC
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAAC-CACAGATGACAAAAGGCTTC
EST: gi|209701276|gb|BW652698.1|BW652698
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7924235|gb|AW830261.1|AW830261
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192302464|gb|FG994800.1|FG994800
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|21887800|gb|BQ741013.1|BQ741013
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4313645|gb|AI460764.1|AI460764
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|254347080|gb|GR856750.1|GR856750
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|151410197|gb|EV280012.1|EV280012
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|15287532|gb|BI471423.1|BI471423
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|16280956|gb|BI944235.1|BI944235
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298182768|gb|HO031503.1|HO031503
EST:     ATGAAGATGGCCGGTTCGGTTAGGACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|18039394|gb|BM307688.1|BM307688
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31305809|gb|CD391012.1|CD391012
EST:     GAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|19053202|gb|BM731869.1|BM731869
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|13181199|gb|BG352539.1|BG352539
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAA-                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|5605758|gb|AI899822.1|AI899822
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|27424685|gb|CA936205.1|CA936205
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|14258527|gb|BG881435.1|BG881435
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|17022353|gb|BM093387.1|BM093387
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31473159|gb|CD415187.1|CD415187
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7041616|gb|AW471568.1|AW471568
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|10709203|gb|BF008927.1|BF008927
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|10234254|gb|BE803142.1|BE803142
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192327160|gb|FK015552.1|FK015552
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|26267877|gb|CA818940.1|CA818940
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|16280798|gb|BI944151.1|BI944151
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|12496222|gb|BG046956.1|BG046956
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4291776|gb|AI441810.1|AI441810
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192297743|gb|FG992791.1|FG992791
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGCCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|9259018|gb|BE347165.1|BE347165
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|213620321|gb|DB961466.1|DB961466
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|209707112|gb|BW653224.1|BW653224
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|5058413|gb|AI736945.1|AI736945
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4288784|gb|AI441382.1|AI441382
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|12774676|gb|BG239603.1|BG239603
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGA-GAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|8283824|gb|BE021383.1|BE021383
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|37995603|gb|CF807192.1|CF807192
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|120531747|gb|EH259880.1|EH259880
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298173480|gb|HO016816.1|HO016816
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7588517|gb|AW704241.1|AW704241
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6724811|gb|AW309210.1|AW309210
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|19934647|gb|BQ079677.1|BQ079677
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31561120|gb|CD486958.1|CD486958
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192334417|gb|FK024110.1|FK024110
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|193586001|gb|FK542465.1|FK542465
EST:     TCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: TCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192331057|gb|FK020277.1|FK020277
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|9563845|gb|BE473354.1|BE473354
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|208143674|gb|GD942047.1|GD942047
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|15288097|gb|BI471988.1|BI471988
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|8827395|gb|BE211125.1|BE211125
EST:     CGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: CGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|208099859|gb|GD900410.1|GD900410
EST:     GGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACGGATGACAAAAGGCTTCA
genomic: GGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4395727|gb|AI494724.1|AI494724
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192334416|gb|FK024109.1|FK024109
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|58018072|gb|CX704814.1|CX704814
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31459158|gb|CD401186.1|CD401186
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|8826368|gb|BE210098.1|BE210098
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31468818|gb|CD410846.1|CD410846
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACTAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31464970|gb|CD406998.1|CD406998
EST:     TGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: TGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|8827315|gb|BE211045.1|BE211045
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4306905|gb|AI443971.1|AI443971
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|9900155|gb|BE609123.1|BE609123
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|58025035|gb|CX711776.1|CX711776
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4313997|gb|AI461116.1|AI461116
EST:     CGGTTCGGTTAGAACTGGAGGAAATGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: CGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7693121|gb|AW761218.1|AW761218
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAGGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6913168|gb|AW394698.1|AW394698
EST:     GGAAAGGGTACTGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GGAAAGGGTACTGTGAGAAGgtatatctat ... tttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGAAAGGGTACTGTGAGAAGgtatatctatgcatttaatcagggatttcaatgaaaaatcagttctcttagtattgccaatattagattttaatttgctatgttcttcaaattgctttga

- - - - - - - - -  TGAAGA
- - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - -  GGAGGA