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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattcgtatcttcgatttaaagccttgcgcgctttgttactttgtgctgcatagcttgcgatgatgaatgatggatatcggttttaattaactac...

Basic information

species Glycine max
transcript GLYMA12G04220.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 2
GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattcgt-atcttcgatttaaagccttgcgcgct----ttgttactttgtgctgcatagcttgcgatgatgaatgatggatatcggttttaattaactac
 | ||||| || ||||||||||| ||||| |||||||| |||||||||||    | |||||  |  | | ||| || | |||    ||  || ||| ||    |||| |||  ||   | ||  || ||     ||||  |||| |  
ATATGCATTTTCTATTTGGTTCTTCGAGCACTCGACACTGTTGgtttgtacctattatcttaaaactcatgccatgtgtgctagaatttataatttctgtctgataggttgt-atttggcatagtgcattc---ttttgcttaaatc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726826|gb|BW672513.1|BW672513
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|151410377|gb|EV280192.1|EV280192
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|15284765|gb|BI468656.1|BI468656
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT