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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGTTATGGAGGTTCAGATAATGTGGTTACTGATGGAGTGGAGCTCCAGCTACACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgttacctggttctttgatttcaattctttgttttcatttatagttgatgtcgatttatcccttctcccctaggctgatcatagctccaaatccaattgtgttttcag

Basic information

species Glycine max
transcript GLYMA12G04210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 2
TGGCGGTTATGGAGGTTCAGATAATGTGGTTACTGATGGAGTGGAGCTCCAGCTACACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgttacctggttctttgatttcaattctttgttttcatttatagttgatgtcgatttatcccttctcccctaggctgatcatagctccaaatccaattgtgttttcag
||| || || || ||||||||||||||  |||||||||  |  ||||| ||||  || ||||||||||| || ||||| ||||| |||||||| || |||||| | |  | ||    |      | | ||  |  |||| |   |    || | ||||   || ||        |  |||                           
TGGGGGATACGGGGGTTCAGATAATGTAATTACTGATGAGGCAGAGCTTCAGCAGCATCAGAAACTTGAAAAGCTTTACATATCAACACGTGCTGGAAAGgttgcttaatcctcctgtggttcatttgtgactcaatttgtttatttcctcaacttataaatt-tctatatcatttttcag--------------------------

upper sequence: GLYMA12G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 2
TGGCGGTTATGGAGGTTCAGATAATGTGGTTACTGATGGAGTGGAGCTCCAGCTACACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgttacctggt-tctttgatttcaat-tctttgtttt---catttatagttgatgtcgatttatcccttctcccctaggctgatcatagctccaaatccaattgtgttttcag
||| |||||||| ||  ||||||||||  | |||||||     || || |||| ||| || ||||||||||||||||| ||||| || ||||| |||||||||||    |  || | | ||| || |   |||  |    |||| |  || |  |   | ||||| ||   | |    ||                                
TGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaatgcctcttacttctatgtaactgtcctgtatatttcttcttaacctttgtatatccttttctctc---actag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4290155|gb|AI441578.1|AI441578
EST:     CACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGTGGTGTAGAAGGTTATATTGTTACTGGA
genomic: CACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgttacctggt ... gtgttttcagCATTATCAAAGGGATATTGTTCGTGGTGTAGAAGGTTATATTGTTACTGGA