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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctacatttagaggatgattgcatcccactggtccttttggacagtcataaatcatttggccacaggtgccattagtgagcaagtgtatgttgacattattctttgtttcag

Basic information

species Glycine max
transcript GLYMA12G03640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctacatttagaggatgattgcatcccactggtccttttggacagtcataaatcatttggccacaggtgccattagtgagcaagtgtatgttgacattattctttgtttcag
||| || ||||||||||||||||| || ||||||||  | ||||| |||||||||||||| ||||| || ||| |||| ||||| || || || ||||||||         || || | |  || | |     |||  | || |  ||| ||   | |    |  || |  | | |||||  |  ||                                            
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgg-------gtaaatttctaacttctcttttatg-ctaca-cttactcgtgtatcta---atgcacatgttacttggcttcttgtag------------------------------------------

upper sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
TCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctacatttagaggatgattgcatcccactggtccttttggacagtcataaatcatttggccacaggtgccattagtgagcaagtgtatgttgacattattctttgtttcag
||||||||||||||| |||||||| || ||||||||  | |||||||||||||| ||||| |||||||| | | | ||||||||  ||||||| ||||||||||| | |  |  |  |||    ||   | |     | |  | |    |     || |||   |  | ||  | ||     |   ||   | ||                                    
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaattttggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttcca-tgttttcag------------------------------------

upper sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 5'ss of exon 2
TCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctacatttagaggatgattgcatcccactggtccttttggacagtcata-aatcatttggccacaggtgccattag-tgagcaagtg-tatgttgacatt-attctttgtttcag
||| ||||||||||||||||| || || ||||||||| | ||||| || || || ||||| |||||||| ||| |||| ||||| || || || || ||||||||| | || | || |   |   | || |   |  ||  | |    || |  || || ||  | |   ||  ||   |    |  |    |  | | | |||||  | | |   | || | | ||||||||||
TCTTAAGAAGATATCTCAGGAACACCCAACTGCCTGCTTGCGAGCTGGAGCACTCATGGCAGTGCTTTCATATCTGGATTTCTTCTCCACGGGGGTCCAGgtaaatcgccattaaaatttgtgtgtgtatattcttttta-acctttttgttgattatgcacgctgagggaagaatactgttttatattttgtggggtcatcaagtaatttatctccttttactatttgtttcag